Gene detail

Gene detail information of Glyur000468s00019624

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	3.00E-75	disease resistance family protein / LRR family protein
NR	XP_003599915.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_004775215.1	6.00E-28	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9ZPS9\|BRL2_ARATH	4.00E-58	Serine/threonine-protein kinase BRI1-like 2 (Precursor)
trEMBL	tr\|G7IZY4\|G7IZY4_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES70166.1}

Sequence

Transcript Sequence

>Glyur000468s00019624.1
ATGTCTAGCAATCATCATGGGGTGGTTCGTTGCAATNAGAAAGATCAACAGACACTATTAGTCTTTAAGAAAGGAATCATTGATCGTTTTAACCGCCTTTCAACATGGTTCACTGAAGAAGATTGTTGTGCNTGGAAAGGAGTCCACTGTGACAACATCACAGGCAGAGTTACAAAAGTTGATCTCAAACCACCTTACCATGAAGAGCAATACAACCCTTTGGAAGGTGAGGTCAATTTTTCATTCCTAGAACTTGAGTTTCTGAATTACATGGACTTGAGTGAGAATGAATTTGACATGATAAGTATTCCACCTATTCATCAAAATGTCACACATACCTCTGACCTTCATTACCTTGACTTATCTTGGAATCTTGATCTTCATATGGATAGTCTTCGCTGGCTTTCTCAACTTTCTTCCTTGAAGTATCTCAGCCTCACTGGAGTTGATCTTCACAAAGAAACCAACTGGCTTCAAGCAGTGGCTATGCTTCCTTCACTATCAGAGTTGCACTTGAGAGATTGTAACCTGAACAATATTATCAGTCCATCTCTAAAGTATGTGAATTTCACTTCACTTGTAACTCTTGATCTTTCTTTAAACAATTTCAGCTCTGAGTTACCTAATGGGTTGTTTAATCTCACAAGAGACATCTCCTATCTTGACCTTTCAAGGAGCAATATACATGGTGAAATACCTCCAAACTTGTTAAACCTTCGAGATTTGAGATACCTTTTTTTGTCTTATAATCAACTCAAAGGGTTAATTCCATATTGGATAGGCCAACTAGAACATATACAAGACCTTGATTTTTCCTACAACATGTTCCATGGTTCCATTCCTTCAACTCTAGGAAATCTCTCATCCTTAGTTTCCTTACATATTGGCTCTAATTTTTTCTTTGATGCAATATCCGAAATAACTTTTTCCAAACTCTCTAATCTAAAAGATCTAGACTTGAGCAACTCAACTTTTGCATTCCATTTTGATCCTGAATGGATTCCTCCTTTTCAACTCAATAGACTTTATTTAGCAAATACAAATCAAGGTCCCAACTTTCCATCATGGATATATACACAGAATTCACTGCATGNTCTTGACTTATCTAGCTCGCGAATTTCATTGGCAAATGGAAACAAGTTTTTGAGCTTTGTAGGAGGAATATCCCATCTTCATTTGTCCAACAACTCAATCAGTGGAGACATATCAAATGTAACACTAAACTCTTCCTATGTAGAATTGGATAGAAATAATTTCACAGGAGGGCTCCCACATATATCACTAATGGCTGGACATGTGGATTTGTCTTACAACACCTTCTCAGGATCAATTCCTCATGGTTGGGAGAATATGAAAAGTTTGTATCATGTGAACCTATGGAGTAATAGGTTATCTGGTGAAGTTCTATTGGACCTCTCAAGCTTGAAGCAACTGAAAGTTATGAACCTAGGAAAAAATGAATTTTGTGGAACCATACCAATCAAGATGCCACAAAACATAGAAGTGGTCATATTGAGAGCTAACCAATTTGAAGGCAATATTCCAGCCCAGATATTCAATCTCTCTTCTCTGTTTCACTTGGATCTTGCCCATAATAAACTTTCAGGATCTATACCTCAGTGTGTGTATAACATGACTCCAATGATTACGGGTACTAGTGGCTATATTGCTGGTTTCCAAATGAATTTGTTTACAAAAGGTGGAGAATATGAGTATCCATTCTATTTCTTGAGGCAAACTGTTGACCTTTCAGCCAACAACTTATCTGGAGAAATCCCCATGGAATTATTTCGCCTTGTTCAAGTTCAAACATTGAACTTATCTCATAACAATTTGAGTGGAACAATACCAAAGGTGATTGGAGGCATGAAAAATTTGGAATCTCTTGATCTCTCCAATAATAAGCTTTCTGGTAAAATTCCTCAGAGCATGACTCTCTTAAATTTCCTAAGTTTTTTGAACCTATCTTACAATGATTTTATTGGGAAAATCCCATTGGGGACTCAGCTTCAAAGCTTTGATGCATCAAGTTATACCGAGAATCGGGAACTATGTGGAGCTCCTCTTAAGAAGTGTATCAAAGAGGAAGAAGAAAATCTTAAAAATGCAAATCCATCTACAGGGAATGAAGATCCTTTAATAGAGTCATTGTATCTAGGCATGGGAGTTGGATTTGTAGTAGGCTTCTGGGGGCTAGGTGGTTCTTTGTTCATCATTAGGAGATGGAGGCACACATACTATCAATTTCTAGATCGAGTGACTCGGGCATTTACTAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00468	40549	42828	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000468s00019624.1	PF08263.7	LRRNT_2	14	51	2.50E-10
Glyur000468s00019624.1	PF13855.1	LRR_8	219	275	1.20E-07
Glyur000468s00019624.1	PF12799.2	LRR_4	602	637	3.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.239
SRR1783600	control	1.275
SRR1783602	moderate drought stress	1.544
SRR1811619	moderate drought stress	1.575

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.190
DRR006520	Root Summer glycyrrhizin high producing strain	0.183
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.122
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.137
SRR2868004	Drought Stress (root)	13.298
SRR2967015	Control (root)	11.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.161
SRR9715740	Leaf	0.163
SRR9715741	Leaf	0.138
SRR9715739	Root	1.101
SRR9715742	Root	1.680
SRR9715743	Root	2.010

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.175
SRR8749028	MeJA induced 9h	0.191
SRR8749029	MeJA induced 9h	0.106
SRR8749030	Uninduced	0.181
SRR8749031	Uninduced	0.235
SRR8749032	Uninduced	0.087

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.180
SRR8400027	Control - Root	5.137