Gene detail

Gene detail information of Glyur000467s00022333.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G17420.1	lipoxygenase 3
NR	CAC43237.1	lipoxygenase [Sesbania rostrata]
Swissprot	tr\|O24371\|LOX31_SOLTU	Linoleate 13S-lipoxygenase 3-1, chloroplastic (Precursor)
trEMBL	tr\|Q93YA9\|Q93YA9_SESRO	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000467s00022333.1
ATTCCGAGCCGGCTAATTGCATTTCAACCGACACGCCACTATAGCCATCTCATTTTATCTCTCGCTGTTCCACTTTGTCCATTGCGCAAAGAGAGGAAGCAGGGTTCAGAGGGAGAGAAAGAGGGGGCAAAAAAAGAAGAAATAAAGCCTCATCAGTATTTTTTTAAGAGAGAAAGAGTACTGATCGAGAACAACCAACCAGTGATGGCCCTTGCAAATGAAATGATNATGGGTTCTTCACCAAGGGTGATTTTTCAGCAGAAGCAGAGCAGGTTCTTGATCACCCCCGTGTTGTTCCCTTTGGAGAACAAAAGGGTGGTGAGGTTGAGGAAGTCTGCTAAGTTTCCCGTTGCAGCTATCAGTGAGGATTTGGTTAAGGGCTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTACTCCTTCTTCTGCTTCTCAACAAGCTTCTGTGCCTGCTGAGAAACCAGTGAAATTCAGGGTCAGAGCTGTGGTGACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGNCCCTTGTGAAGCATCTCGATGCTTTAACTGACAGGATAGGAAGAAATGTTGTCCTTGAACTTGTTAGCACTGAGATTGATCCAAAAACGAAAGCTGCAAAGAAGAGTAATGAAGCAGTTCTGAAAGACTGGTCGAAGAAGTCCAATATTAAGGCAGAGAGAGTTAACTACACAGCTGAGTTCATTGTTGACTCGAGTTTTGGGGAGCCAGGAGCTATTACTGTGACAAACAATCACCAGAAGGAGTTTTTCTTGGAAAGCATAACCATTGAAGGATTTGCTACTGGAGCAGTTCATTTCCCCTGCAACTCGTGGGTTCAAGCCAGAAAAGATCTTCCTGGAAAGAGGATTTTCTTTTCTAATAAGCCTTATTTACCCGACGACACACCTGCTGGGCTTAGATTATTTAGGGAGAAAGAGCTGAGAAATCTGAGGGGTGATGGCAAAGGAGTTAGAAAGCTATCTGACAGAATATATGACTTTGACACATACAATGATCTGGGAAACCCAGACAAAGGTGTTGATCTTGCCAGACCCCGTCTTGGAGGATCTGAAATGTACCCATACCCAAGACGGTGTCGTACTGGCCGTGTCCCAACCGATACAGATATGTATGCAGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGGGACGAACGATTTGAGGAGTCAAAGCAGAACACGTTCACTGTGAAGAGGCTCAAGGCAGTNCTCCATAACTTGATCCCGGGGCTTAAAGCAACCCTTTCAGCTCACAACCGAGACTTCAATGAGTTCTCAGATGTTGATGGCCTTTACAGTGAAGGGCTGCTCATTAAGTTTGGGTTGCAAGATGACGTTTTGAAGAAATTGCCCAAACTTGTCACCAAGATCCAAGAATCCAGCCAGGGTCTTCTTAAGTATGACACTCCCAAGATTATATCCAAGGACAAATTTGCCTGGCTGCGAGATGACGAATTTGCCCGCCAAGCAATAGCAGGAGTTAACCCTGTTAACATTGAGAAGCTTAAAGTATTCCCACCCGTTAGCCAATTAGATCCTGAAATATATGGCCCACAAGAATCTGCTCTTAAAGAAGAACATATTTTATGTCATCTTAATGGCATGACTGTCCAACAGGCAATAGATGAAAATAAGCTGTTTATAATAGATTATCATGATGTCTACCTTCCATTTCTTGAAAGGATCAATGCCCTTGATGGTAGAAAATCCTANGCCACACGTACCATATTTTTCTTGACACCCTTTGGTACTCTGAAGCCTGTGGCCATAGAACTTAGCCTGCCTCCATCTGGACCAAGCTCGCGATCNAAGCGCGTAGTTACACCTCCTGTTGATGCAACTACTAATTGGGTGTGGATGCTTGCCAAGGCCCATGTTTGCTCCAATGATGCTGGGGTTCACCAACTTGTCAACCATTGGTTACGCACACATGCTAGCTTGGAACCATTTATATTGGCGGCTCATAGGCAATTGAGTGCCATGCATCCTATTTTCAAGTTATTGGATCCACACATGAGGTACACCTTGGAAATCAATGCTTTGGCTCGCCAGAGCTTGATCAATGCGGATGGTATCATTGAGTCTTGCTTCACTCCTGGTCGCTATGGCATGGAGATTAGAATGGCAGTACCTGACCCAACACAACCACATGGTCTAAAGCTCATAATGAAAGATTACCCTTATGCAGAAGATGGGCTACTAATCTGGTCAGCAATAGAGAATTGGGTCCGCACCTATGTGAACTATTACTACCCAAATCCAAGCGTGATATGCAATGACAGAGAGCTACAAGCTTGGTACTCTGAGTCAATCAATGTGGGACATGCTGATATGAGGCATGCAAGCTGGTGGCCCACATTGGACAACAGTGACAACCTTGTCTCAGTCCTCACCATCTTGATTTGGAATGCATCTGCACAACATGCTGCTCTTAACTTTGGTCAGTACCCTTATGGAGGGTATGTGCCAAATCGTCCACCCTTGATGAGAAGACTAATCCCTGATGAGAGTGACCCTGAATATGCAAGTTTCNTAGCAGACCCACAAAAGTATTTCCTCAATGCATTGCCTAGTGTGTTGCANGCTTCAAAATACATGGCTGTGGTTGACACACTTTCCACTCACTCACCTGATGAGGAGTACATTGGGGAGCGGCAACAACCGTCGATTTGGTCCGGTGATGCCGAGATCGTTGAGGCGTTCTACGAGTTCTCTGCAGAGATCAGGCAGATAGAGAAGGTGATTGAGAGTAGGAACTGTGATAAGACTCTGAGGAACCGTTGTGGTGCCGGGGTGTTGCCTTATGAGTTACTTGCACCTAGCTCAGAACCTGGTGTTACTTGCAGAGGGGTTCCAAACAGTGTGTCCACATAAAAAAAATCCTAAGTAAATAAAATAAGGGAGTCACATCACATCTCACATTTTGCTAAGCATAATTATGGTTGGCTTAATTACTAGTAATTTACCATGGTAAGTGACTCNGTGGAACACATGATAACGCACATTTTGTACCTAGATTTGATAAATGATAGATGACAATTGGTAATGTAGTATTGTATAAACTGTATATCATCATAATGAGTTCNGTATTGGAGGATGTGTGCTGTTTATAAAATTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00467	129525	135557	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000467s00022333.1	PF01477.18	PLAT	205	293	7.70E-15
Glyur000467s00022333.1	PF00305.14	Lipoxygenase	305	719	5.00E-152
Glyur000467s00022333.1	PF00305.14	Lipoxygenase	719	952	2.90E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	68.585
SRR1783600	control	68.493
SRR1783602	moderate drought stress	83.404
SRR1811619	moderate drought stress	81.889

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	120.798
DRR006520	Root Summer glycyrrhizin high producing strain	119.349
DRR006521	Root Winter glycyrrhizin high producing strain	49.709
DRR006522	Root Winter glycyrrhizin high producing strain	48.498
DRR006523	Root Summer glycyrrhizin low producing strain	106.009
DRR006524	Root Summer glycyrrhizin low producing strain	106.184
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.956

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.498
SRR2868004	Drought Stress (root)	118.628
SRR2967015	Control (root)	58.113

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	153.744
SRR9715740	Leaf	133.505
SRR9715741	Leaf	248.038
SRR9715739	Root	71.147
SRR9715742	Root	320.684
SRR9715743	Root	267.070

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	93.731
SRR8749028	MeJA induced 9h	132.673
SRR8749029	MeJA induced 9h	136.207
SRR8749030	Uninduced	391.521
SRR8749031	Uninduced	215.347
SRR8749032	Uninduced	145.170

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	102.413
SRR8400027	Control - Root	112.252