Gene detail information of Glyur000467s00022314 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14080.2 | 1.00E-64 | Small nuclear ribonucleoprotein family protein |
| NR | XP_007135420.1 | 4.70E-85 | hypothetical protein PHAVU_010G127900g [Phaseolus vulgaris] |
| COG | YP_004893613.1 | 1.00E-06 | putative snRNP Sm-like protein [Thermoproteus tenax Kra 1] |
| Swissprot | tr|Q8LFL8|LSM1B_ARATH | 3.00E-82 | Sm-like protein LSM1B {ECO:0000305} |
| trEMBL | tr|V7APA7|V7APA7_PHAVU | 2.00E-85 | Uncharacterized protein {ECO:0000313|EMBL:ESW07414.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00467 | 25546 | 29286 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000467s00022314.1 | PF01423.17 | LSM | 14 | 80 | 1.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.008 |
| SRR1783600 | control | 8.306 |
| SRR1783602 | moderate drought stress | 7.744 |
| SRR1811619 | moderate drought stress | 7.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.437 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.738 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.301 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.966 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.840 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.776 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.869 |
| SRR2868004 | Drought Stress (root) | 30.474 |
| SRR2967015 | Control (root) | 32.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.656 |
| SRR9715740 | Leaf | 21.553 |
| SRR9715741 | Leaf | 22.117 |
| SRR9715739 | Root | 12.901 |
| SRR9715742 | Root | 14.866 |
| SRR9715743 | Root | 14.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.125 |
| SRR8749028 | MeJA induced 9h | 11.015 |
| SRR8749029 | MeJA induced 9h | 5.752 |
| SRR8749030 | Uninduced | 11.602 |
| SRR8749031 | Uninduced | 2.039 |
| SRR8749032 | Uninduced | 3.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.290 |
| SRR8400027 | Control - Root | 34.639 |