Gene detail information of Glyur000466s00022911 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63520.1 | 3.00E-52 | carotenoid cleavage dioxygenase 1 |
| NR | XP_006581448.1 | 0 | PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase-like isoform X2 [Glycine max] |
| COG | YP_007170135.1 | 4.00E-77 | 9-cis-epoxycarotenoid dioxygenase [Halothece sp. PCC 7418] |
| Swissprot | tr|Q84KG5|CCD_CROSA | 3.00E-62 | Carotenoid 9,10(9',10')-cleavage dioxygenase |
| trEMBL | tr|K7KTX5|K7KTX5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G08952.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00466 | 148958 | 153231 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000466s00022911.1 | PF03055.10 | RPE65 | 93 | 587 | 7.20E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.160 |
| SRR1783600 | control | 0.171 |
| SRR1783602 | moderate drought stress | 0.419 |
| SRR1811619 | moderate drought stress | 0.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.176 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.412 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.950 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.104 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.017 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.129 |
| SRR2868004 | Drought Stress (root) | 20.287 |
| SRR2967015 | Control (root) | 11.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.007 |
| SRR9715740 | Leaf | 0.070 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.070 |
| SRR9715742 | Root | 0.050 |
| SRR9715743 | Root | 0.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.113 |
| SRR8749028 | MeJA induced 9h | 0.101 |
| SRR8749029 | MeJA induced 9h | 0.194 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.404 |
| SRR8400027 | Control - Root | 1.447 |