Gene detail

Gene detail information of Glyur000466s00022908.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25820.1	2.00E-156	Exostosin family protein
NR	XP_003527839.1	0	PREDICTED: probable glycosyltransferase At5g03795-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FFN2\|GLYT3_ARATH	5.00E-88	Probable glycosyltransferase At5g03795
trEMBL	tr\|K7KTX9\|K7KTX9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08960.2}

Sequence

Transcript Sequence

>Glyur000466s00022908.2
GAGACTGAGAGAGGAACAGTGTCAAAATTATTTGGCTGCTGACGGGATCACGGTCCGGTCCACCCAACTCAACTGGGTTNTGTGTCCGAACCAAACACCGCTTNCTGTTTTGCTTCGTCACTTGAAACTTCCAACATCTTCCTTCCTTCGAGGCTCCGACGTGGGGATTAGTACCAGATTGCAGAGTTGATATGGTAATTGGAAGTCAACTAATGGTCGCTCAGTAGTTTTAGCAAAATGGGGCAAGAATTTTCGTCCATATTTCAGCTGGAAAAAAAGAGATTGTTGTGGCTTGTTGGCATTACGTTTGCACTGATNTTAGCATTCCAGTATTTTGAGCTTCCTTATGGTAACATTCAACCCTCTGTATTCTCTGCTGACAACATACCAACACCTGATAGTAGTAGATTCCAAGTTGCAGATTCACCATCTGCGCCTGGAATGCATAACAATATGACAATTTCGAATCAAACAAATTCAACTGGTAAACATCCCCTTGAGATATTTAATAACACCATGACATCTGAGGGAAAGGACACTATTTCAAGATCTGATTCCATATCAAATCCAGGAAAGGTATCAAACAACTCTTTAGGATTTGGTAAGTCTGATGGAAGTTCGACGGTGGAAATTATTCGGGTATCAGATAACAGCTCTGCAACAGAGCAGGCAGGGAATATANGTATGGATTTGACAAGAGAGGTCAACACTACATCTGGATCAGATCATNAGTCAGTGAGTTCATATGCTAATTTTCATTCTCCATCCCATGCAATAGCTCCAACATATTTAACTCCACCTGTAAGTCCTCCAACAAAGGTGAGCCCAAATATAGCGCCTCCAGTGTTATCAAATGAGTCTGGAAAAACTGATTCCATAAAGGATGAGAGGTTCAGGCCATTACAAGATGATGTCAATATAATGAACAAGAATTCTTCTATCACTAGTGTGCCTAAGAAGACTAAAGATTCTCACAGACCAGTTCCAGAAATAACACCAATCTCAGAAATGGAGAAGTCATTGCTTCAAAACCATGCTTCTCATCGTTCTATGAGGCCAAGGTGGTCTTCAGCTGTTGATCAAGAGCTACTGCAGGCCAGATCAGAGATTGAAAATGCACCAATTGTAACGAATGTTGAGAATCTTTATGCTCCTCTTTATCGTAATGTTTCCATGTTTAAGAGGAGCTATGAATTAATGGAAAAGACTCTCAAANTGTATGTATACAGAGAAGGTTCTAAGCCCATACTGCATTCACCATATCTTCTGGGAATTTACGCTTCCGAGGGATGGTTCATGAAGCAGATGGAAGGCAATAAAGTATTTGTTACTAAAGACCCAAAGAAGGCCCATCTGTTTTACTTACCTTTCAGTTCTCGAATGCTAGAGGAAACTTTGTATGTAGAGAATTCACATAATCATAGGAACCTAGCTCAGTATCTGAATAACTATGTGGACATGATTGCAAGGAAACATCCTTTCTGGAACAGAACAGGAGGTGCTGATCATTTTCTTGTTGCTTGCCATGACTGGGACATATCGCTTCCCGAAACTTATGTCCGCAATTCTCAGAACCCCACCAGAGACCTTGGTGGAAAACCAGTTTCAAAGAGGAAAACTCTTGCGTTTTTTGCAGGCGGCATGCATGGTTACGTTCGTCCGATCCTGTTGCAGCACTGGGAAAATAAAGACCCTGACATGAAAATCTTTGGGATAATGCCAAAGTCAAAGGGAAACAGGAACTACATCCAGTACATGAAGAGCAGCAAGTACTGTATTTGTGCAAAGGGGTATGAAGTTAATAGTCCAAGAGTTGTGGAGGCCATCTTCTATGAATGTGTCCCAGTTATTATATCAGACAATTTTGTGCCTCCTTTTTTTGAGGTTTTGAATTGGGAATCCTTTGCTGTTATTGTCTTGGAGAAGGATATTCCAAATTTGAAGAGTATACTCCTCTCCATCCCTGAAAAGAGGTACCTTCAAATGCAGTTGAGGGTGAAAAAGGTGCAGCAGCATTTCCTTTGGCACAGGAGCCCTGTCAAGATCTTTTGTACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00466	136923	144795	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000466s00022908.2	PF03016.10	Exostosin	322	433	1.20E-21
Glyur000466s00022908.2	PF03016.10	Exostosin	433	575	1.50E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.294
SRR1783600	control	11.123
SRR1783602	moderate drought stress	14.212
SRR1811619	moderate drought stress	16.010

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.026
DRR006520	Root Summer glycyrrhizin high producing strain	11.162
DRR006521	Root Winter glycyrrhizin high producing strain	6.575
DRR006522	Root Winter glycyrrhizin high producing strain	6.853
DRR006523	Root Summer glycyrrhizin low producing strain	8.712
DRR006524	Root Summer glycyrrhizin low producing strain	10.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.796
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.976

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.253
SRR2868004	Drought Stress (root)	18.096
SRR2967015	Control (root)	16.364

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.449
SRR9715740	Leaf	8.034
SRR9715741	Leaf	9.125
SRR9715739	Root	1.740
SRR9715742	Root	7.875
SRR9715743	Root	6.677

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.649
SRR8749028	MeJA induced 9h	15.475
SRR8749029	MeJA induced 9h	12.540
SRR8749030	Uninduced	13.184
SRR8749031	Uninduced	20.146
SRR8749032	Uninduced	18.390

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.303
SRR8400027	Control - Root	18.703