Gene detail information of Glyur000466s00022904.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32810.1 | 0 | carotenoid cleavage dioxygenase 8 |
| NR | XP_004501157.1 | 0 | PREDICTED: carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like [Cicer arietinum] |
| COG | YP_001424409.1 | 3.00E-70 | lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii Dugway 5J108-111] |
| Swissprot | tr|Q8LIY8|CCD8B_ORYSJ | 0 | Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic (Precursor) |
| trEMBL | tr|G7J3F4|G7J3F4_MEDTR | 0 | Carotenoid cleavage dioxygenase {ECO:0000313|EMBL:AES73861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00466 | 86308 | 90088 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K17913 | CCD8 | EC:1.13.11.69 1.13.11.70 | Carotenoid biosynthesis | map00906 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000466s00022904.1 | PF03055.10 | RPE65 | 82 | 562 | 2.20E-107 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.756 |
| SRR1783600 | control | 5.675 |
| SRR1783602 | moderate drought stress | 2.785 |
| SRR1811619 | moderate drought stress | 2.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.782 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.633 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.699 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.736 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.716 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.567 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.430 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 60.188 |
| SRR2868004 | Drought Stress (root) | 114.839 |
| SRR2967015 | Control (root) | 28.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.110 |
| SRR9715740 | Leaf | 0.137 |
| SRR9715741 | Leaf | 0.142 |
| SRR9715739 | Root | 4.674 |
| SRR9715742 | Root | 18.581 |
| SRR9715743 | Root | 15.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.022 |
| SRR8749028 | MeJA induced 9h | 0.087 |
| SRR8749029 | MeJA induced 9h | 0.105 |
| SRR8749030 | Uninduced | 0.045 |
| SRR8749031 | Uninduced | 0.025 |
| SRR8749032 | Uninduced | 0.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.578 |
| SRR8400027 | Control - Root | 12.629 |