Gene detail

Gene detail information of Glyur000466s00022895.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G32880.1	homeobox gene 8
NR	KHN18159.1	Homeobox-leucine zipper protein ATHB-8 [Glycine soja]
Swissprot	tr\|Q39123\|ATHB8_ARATH	Homeobox-leucine zipper protein ATHB-8
trEMBL	tr\|I1K9E8\|I1K9E8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G09100.1}

Sequence

Transcript Sequence

>Glyur000466s00022895.1
CAACTTGTGTGATGGATGAGTGATAAAAGAGAGGGAGGGAGGTTTTGTAATTGTAATTGGAAGTGTTGGAAAGTGCCAAAACGAAGTAGTGCAAGAAAAGCAACAGCAGAAAAGCAACAGGCAAAACAGCTAAAGAAGAACAGAAAGCAGAGGTGGAATGATGTGAAAACAAAAAAAAAATGTTCTGCCTATATTTCTGTCTGATATTGGGGGGTTTTTCTCTTATAAGCAACCGCATCTCTCTCCTCTGTCCCAATCCCAATCTACCCCAAAACACTGGTCATTTTCCTTCCTCCATTCTTANTTTATACAGACACGCAAAAATAGAAAGATAAAAAGAAAAACTCAAACTCCATTATTCTCCATAATATTCACTNCACTTCTCACATCTCTCTCTTCCTCTGCCATATAATACATACAACCCAACAACTGTCACAGACAAACTCTGAGTTGAGTAGTACCTCTTTTAAGTTTGCCAGATTCATTCTCTTCTCTCTTTCATGTCCAACTGATCTATCTCATGCTTCTTAATTTGCTCTTGAGCTAGCAAGCTTTATCTGAAAGCACTACGGCTACCACAGTCATAGGGATGATGGCGGTGAGTACCTCGTCCTGCAAAGATGGGAGCAAGGTGGCAATGGACAACGGCAAGTACGTGAGGTACACGCCGGAGCAGGTGGAAGCACTGGAGNGGCTCTACCATGAATGTCCCAAACCCAGTTCCATTCGCCGCCAGCAACTCATCAGAGAGTGTCCCATTCTCTCCAACATCGAGCCCAAGCAGATCAAGGTTTGGTTCCAGAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGCAGTGAACAGGAAACTAACAGCAATGAATAAACTACTGATGGAGGAAAACGACAGATTGCAGAAACAGGTGTCTCAGCTCGTGTATGAGAACAGCTTTTTCCGCCAACAGACACAACAGAATCAGGCGACCCTTGCCACGACGGACACGAGCTGTGAGTCGGTGGTAACCAGCGGTCAGCGCCACTTGACACCGCAGCATCCACCAAGGGATGCAAGCCCTGCNGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTAGCCGAAATCCTCAAAGATAGGCTCTCATGGTATCGTGATTGCCGAACTGTGGATGTTCTGAATGCTATGTCTACAGGAAATGGGGGAACCATTGAATTGCTTTACATGCAGTTGTATGCGCCAACAACATTGGCACCAGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTAGTATGCCCCCAGTGCAGCATTTTGTTAGAGCTGATGTGCTGCCAAGCGGGTATCTGATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCCTGGAGTGTGCCTGAAGTTTTGCGCCCACTTTATGAGTCATCCATGCTGCTTGCTCAGAGGACAACTATGGCGGCTTTACGTCATCTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTCACTGGATGGGGAAGAAGGCCTGCAGCTCTACGCGTGCTTAGTCAGCGACTGAGCAAGGGCTTTAATGAGGCTGTCAATGGGTTTGCAGATGATGGATGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAGATGATAGGAGCAAACCTTGGTTATAACAATGGATTTCCACCCATGACCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGTTACAGAATGTCCCTCCAGCTATCCTCCTTAGATTCTTGCGGGAACACCGATCAGAATGGGCAGATACCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCATGCAACTTGCCAGGGGCCCGAGCTGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGGCAAGTTATTTGCTCTTAATTTCTTTTCTAAAACAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGATGACATGACTATTCCTGGTGATATTTTCCTCTTGCAACTTTGTAGTGGAGTGGATGAGCATGCAGTCGGCACCAGTGCAGAACTTATTTTTGCTCCAATAGATGCATCTTTTTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTCGATTCTGGCACGAATGCTGCTAGTCCAAACCGCACACTTGATCTTACTTCTGCACTTGATGTTGGAACCACAACAAACAAAGCAGCTAGTGACAATTCAGGTCATTCTGGGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATATAGCAACCATGGCCAGACAGTATGTCCGCAGTGTTATTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCTCGTTTTGGTTCTCACAATGCCTTTCACTTGCCACCTGGCACTCCTGAGGCACAAACACTTGCTCGGTGGATCTGCAACAGCTATAGGTTCTATCTCGGGGTAGAACTACTAAAGTGTGAAGGAAGTGAGTCCATGCTCAAATCCCTTTGGCATCACTCAGACGCAGTTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCTGGGCTTGACATGCTTGAAACCACCTTGGTTGCACTTCAAGACATCACCCTGGAGAAAATTTTTGATGACAATGGAAAGAAAACCATGTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATTTGTTTGTCCAGCATGGGGAGGCCAGTATCCTTTGAGAGAGCAGTAGCATGGAAAGTATTGAACGAAGAAGAGTCAGGTCATTGCATCTGTTTTATGTTCATCAACTGGTCTTTTGTCTGATAGATTATTAGAGAGTATAGCAGCGATGTAGGAAAGTAGAACGCAATGTTAATTACCTTTACATCTTAACTTTTGGAGAATCCCTAGAATGCNATATAACTATGAGTAATGATACATAGACATCCCAATGGTGTCATCACCCATCCAATATCTCTCATCTCTTTGACTCTTTCTATCTTTATCTTATTATCACATCATATTACCTATCATATCTATTACTTCTCTTTCTTCTATCTCTTTCTGTCTCTGGGTGTATACACCCATTGTGGTGTCNATCACACATTATCCTATAACTATTAAATACTGTTGTGGGCATATGCAGCTCTAAGATCTATCTACATATGGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00466	22946	29966	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000466s00022895.1	PF00046.24	Homeobox	21	79	9.50E-16
Glyur000466s00022895.1	PF01852.14	START	167	375	3.30E-51
Glyur000466s00022895.1	PF08670.6	MEKHLA	709	854	6.10E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.770
SRR1783600	control	24.867
SRR1783602	moderate drought stress	27.230
SRR1811619	moderate drought stress	26.711

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.851
DRR006520	Root Summer glycyrrhizin high producing strain	46.725
DRR006521	Root Winter glycyrrhizin high producing strain	13.551
DRR006522	Root Winter glycyrrhizin high producing strain	13.426
DRR006523	Root Summer glycyrrhizin low producing strain	49.255
DRR006524	Root Summer glycyrrhizin low producing strain	49.536
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.702
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.712

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.548
SRR2868004	Drought Stress (root)	25.027
SRR2967015	Control (root)	24.601

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.894
SRR9715740	Leaf	4.740
SRR9715741	Leaf	5.829
SRR9715739	Root	12.541
SRR9715742	Root	82.697
SRR9715743	Root	66.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.707
SRR8749028	MeJA induced 9h	10.119
SRR8749029	MeJA induced 9h	15.391
SRR8749030	Uninduced	12.729
SRR8749031	Uninduced	3.950
SRR8749032	Uninduced	3.814

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.895
SRR8400027	Control - Root	49.923