Gene detail

Gene detail information of Glyur000465s00024386

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20890.1	0	TCP-1/cpn60 chaperonin family protein
NR	XP_003539816.1	0	PREDICTED: T-complex protein 1 subunit beta-like [Glycine max]
COG	YP_003669546.1	1.00E-108	thermosome [Staphylothermus hellenicus DSM 12710]
Swissprot	tr\|Q940P8\|TCPB_ARATH	0	T-complex protein 1 subunit beta {ECO:0000303\|PubMed:11599560}
trEMBL	tr\|I1LRE4\|I1LRE4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G09250.1}

Sequence

Transcript Sequence

>Glyur000465s00024386.1
ACACTCTTCCGCGGTCAGTGCCTCTCTCTCTGTTTAGTTTCAGTCTTTCATCACACTGTATGCATTTCAAATCTTCACCTCTCTTCGTTCGCTAAGTTCCACTCCACCGTGCATCGCACCAACTGCTTCTGTGACCACATTTGAATTCCCATAATGGCTATTGATAATATTTTTAAAGATGAGGCCAGTGAAGAAAAAGGAGAGCGAGCCAGAATGGCATCTTTTATTGGGGCCATGGCTATCGCTGACTTGGTGAAGACTACNTTAGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGACGTGAAGTTACTGTCACTAATGATGGTGCTACAATCTTGAAGTCCCTTCACATTGATAACCCAGCTGCTAAAGTCCTTGTGGACATATCAAAAGTTCAAGATGATGAAGTTGGNGATGGAACNACCTCTGTTGTTGTATTGGCTGGGGANCTATTAAGGGAGGCAGAAAAGCTGGTTGCAGCTAAANTTCATCCAATGACGATNATATCAGGTTTCCGGATGGCAGCTGAGTGTGCACGTAATGCGTTGTTACAGAAGGTTGTGGACAACAAAGAAGATGCTGAGAAATTCAGGACAGACTTGATGAACATTGCAATGACCACTTTGAGCTCCAAAATTCTCTCACAAGACAAGGAGCATTTTGCAAAATTAGCTGTAGATGCTGTAATGAGACTAAAGGGAAGCACCAATTTAGAATCTATCCAGATCATAAAAAAACCTGGAGGATCACTAAAGGATTCATTTTTAGATGAAGGATTTATTCTTGACAAGAAAATTGGCATTGGACAACCCAAACGCATAGAGAATGCAAAGATCCTGGTGGCAAACACTGCCATGGACACAGACAAGGTGAAGATATACGGAGCACGTGTTCGTGTCGATTCTATGTCTAAAGTTGCTGAGATCGAAGGAGCTGAGAAGGAGAAAATGAGAGAAAAGGTTCAGAAGATAATAGGTCATGGCATCAACTGTTTTGTTAACAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCAGGAATATTGGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTNTGGTAACTGGTGGTGAAATTGCTTCAACCTTTGACAACCCTGAGTCTGTTAAGCTTGGGCATTGTGACCTTATTGAGGAGATTATGATTGGTGAGGATAAATTGATTCATTTCTCCGGTGTTGCAATGGGACAGGCATGCACAATAGTTCTGAGAGGCGCTAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGATGCCTTGTGTGTGCTATCTCAGACTATCAATGACAGCAGGGTGTTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGGCAAAGGATGTGGATGCATTNGCTAGGAAAACCCCGGGAAAGAAGTCTCTTGCTATCGAGGCATTTTCCCGGGCACTCTTGGCTATCCCAACAATCATAGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAGCTNCGTGCAGAGCACCAGAATGAGGGATGCACTGCTGGAATTGATGTTATCTCTGGTTCTGTCGGAGATATGGCTGAACGGGGGATTTGTGAAGCATTNAAAGTCAAGCAGGCCATATTGCTATCTGCAACCGAGGCNGCTGAGATGATCCTTAGAGTTGATGAAATCATAACCTGTGCTCCAAGGAGGAGAGAAGANAGAATGTAACATGCATGCTTGGGATGCCTTGGCAATTTCTGGCGTATTGATATGGTGTTTGTGATTTGAAGAACTGGTTATCATATAATTATAAATTATAATGCTAAAAATTTGTTTAGGTAAATTTTGACTTGTTTTGGAACCCAGGCGCGTGACGGTTGATTGAGGTGGGTGGCAGGGGTATTGGGGGTTCAGATGGGTATTACATGGTGGTGGTGAAGAAATTTTGCTGAGAACCCTTTACTCCTTACACTGCAATTAGGAGTTAAATTTGTTCAGGACAGTATGTTGGTTCATGAAAAACGATATCTTGTTTTATTTCCTTTATTAGCAATGTATTCATTCTGTTTTGTCTCGTATTCAATTAGTAGAATTGAAGTTGGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00465	64923	71290	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function

GO:0005524 ATP binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000465s00024386.1	PF00118.19	Cpn60_TCP1	30	518	5.10E-138
Glyur000465s00024386.2	PF00118.19	Cpn60_TCP1	30	518	5.10E-138
Glyur000465s00024386.3	PF00118.19	Cpn60_TCP1	30	518	5.10E-138
Glyur000465s00024386.4	PF00118.19	Cpn60_TCP1	30	518	5.10E-138

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.329
SRR1783600	control	48.441
SRR1783602	moderate drought stress	44.349
SRR1811619	moderate drought stress	43.580

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	92.188
DRR006520	Root Summer glycyrrhizin high producing strain	91.485
DRR006521	Root Winter glycyrrhizin high producing strain	61.874
DRR006522	Root Winter glycyrrhizin high producing strain	60.990
DRR006523	Root Summer glycyrrhizin low producing strain	86.265
DRR006524	Root Summer glycyrrhizin low producing strain	86.049
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.139
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.097

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	159.997
SRR2868004	Drought Stress (root)	99.596
SRR2967015	Control (root)	91.622

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.713
SRR9715740	Leaf	48.817
SRR9715741	Leaf	48.082
SRR9715739	Root	27.705
SRR9715742	Root	75.823
SRR9715743	Root	69.020

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	157.182
SRR8749028	MeJA induced 9h	78.479
SRR8749029	MeJA induced 9h	83.586
SRR8749030	Uninduced	12.222
SRR8749031	Uninduced	6.156
SRR8749032	Uninduced	14.394

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	104.335
SRR8400027	Control - Root	95.489