Gene detail

Gene detail information of Glyur000465s00024382.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	2.00E-172	Leucine-rich repeat protein kinase family protein
NR	XP_007140364.1	0	hypothetical protein PHAVU_008G105600g [Phaseolus vulgaris]
COG	YP_004775215.1	8.00E-53	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|A5C1G0\|A5C1G0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83822.1}

Sequence

Transcript Sequence

>Glyur000465s00024382.1
ATGAATTACCATCCTAGTGCAAATCCCAAGAACCTATTGTTACAAATCCTTAATAGTTTTCTTCTATTACTATGCATGATCTCAATAAGCTTGTACTCACCAACAACAGCAGCAACAACCTTGCAAGGAAATGAAACTGATCTACATGCTTTACTTGACTTCAAGAGTAGGATAGTTCAAGATCCATTCCACATCATGAGTTTCTGGAATGACTCCATCCACCACTGCAATTGGGTAGGAATCTCCTGCAACACCTCCAATGGAAGGGTCATGCAACTGAGCCTTGTACACCTTAGACTATCAGGCACTCTTGCACCATCCATAGGGAACCTCACATTCCTCACCACACTCAAACTTCTAAACAATAGCTTCCATGGTGAATTCCCACAAGAGATGGGTAAGTTACTATACCTGCAGCAACTAAACTCTAGCTATAATAACTTTGGTGGGGGTATTCCAAACCTTAGCAACTGTACAAAACTAACAGTACTGACTGTAGGTGCTAACAATCTCAAAGGAACAATCCCAACTTGGATAGGAAACCTTTCTTCTCTGTCCCTTATTAGCCTTGGCTTGAACAACTTGCATGGAAGCATACCACATGAGGTAGTTCCTCCTTCAATCTTTAANCTTTCTTCACTTTNCTATTTCACTCTTACCCAAAACCATTTCCATGGGAACTTACCAGCTGATATTGGACTTACTCTTCCAAACCTTCAAGTATTTGCTGGTGGGGTCAACAATTTCACAGGGACTATTCCTGCATCATTGTTAAATGCATCAAGGCTAGAAGTGCTTGACTTATCTGTTAATGCTTTCACTGGAACACTTCCTAAGAACATAGGGGTCTTGAACAAGCTAACTAGGCTTAGCTTTGAGCACAATAGGCTTGGAACTGGGAAAAAAGAAGACCTGAGCTTTCTTGATTCTTTGGCTAATTGCACAAGTCTACAATTTCTAAGACTAGGCACAAATAACTTTGGTGGAGAGTTGCCTAACTCAATTGCNAANTTCTCAAGACANNTGCAAATCTTTGCCATTGGTTCCANTNGAATACAAGGAAAATTACCTGTTGGGATTAGCAATCTTGATNACCTGTCCCTTCTATCATTAGAAGGAAACCACTTAACTGGTAGTGTTCCTGATGCATTAGGTAAGCTGCAAAATCTGAGAGAGTGTTATCTGAATGGCAATCAATTTTCAGGAAGGATACCTTCCTCATTAGGGAATTTGTCCTCAGTGATAAAACTCTTTCTTGAGGAGAACAACTTTGAAGGAAGCATACCTTCTAGTCTTGGAAAATGCNAGAACTTATTGGTGTTTAGCCTCTATCTTAACAAGCTTAGTGGAACAATACCAAAAGAAGTCTTTGGCCTTTCTTCACTGGCACTATATTTTGATGTGTCATATAATGCTTTGTCAGGGACTCTGCCAGCTGAAGTGGGTAAGCTACAGAATGTTGGAGGGTTGTTGCTGTCTGAGAACAACTTTTCTGGACTCATTCCATCTTCTCTTGATCTCTCACACAATAACCTTNCTGGTAGGATTCCTGAATTTCTTGGTGAGTTCACAGTACTCAAGCGCCTCGTTCTTTCTTACAACGATTTTGAAGGCGAGATACCAAAGAATGGCATCTTTAAGATTGCAACTTCCATTTCATTAATTGGAAACAACAAGCTTTGTGGTGGTATCCCAGCACTGAATTTTCCTTCATGCACTATCAAGAAAGCCTCTTTACTAGAAAAACTTCATGCCCCCAAAGTGGCTATCCCTATAGCTATTGCACTTTTATTTTTGCTCTTGCTATCATGTTTTCTTACATTCTTCATAGTAAGAAAACAAAGAAAGAGAACTTCAAGATCAACTGCAACCAAGGATTTGGAAATTTCTTACTCAGAAGTTGCAAAATGCACTGGAGGGTTCTCNCAGGAAAACCTGATTGGCTCAGGAAGNTTTGGTTCTGTATACAAAGGAACTCTTTCAAGCGATGGATCAATTGTTGCAGTTAAAGTGTTNAATCTTCAACAAAGAGGAGCCTCAAGGAGCTTCATTGATGAATGCCAAGTTCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCAAGTGTTGATCACCAAGGTAATGACTTCAAAGCTTTAATCTTTGAGTTCATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAGCAACATGCAATCTCAGACAACCAAGACATTATTGACGTTCATCCAAAGACTGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTATTGTGAAACTCCAATTGTTCATTGTGACATAAAACCAAGCAATGTTCTTCTTGACAATGATATGGTAGCCCATGTTGGTGACTTTGGATTGGCTACATTTCTGCTTGAAGACTCAATCAGTTCTTCTGGANAAGCAGTTATGTCAGCTAGACTAAGAGGAAAAAGACCAACAGATGAAGCATTTGAAGGTGGCATGGGAATTCGCCAGTTTATAGCAATGGCTTTACCNAACCATGTCATGGATATAATTGATCCTTCATTAGTAGCTGAAGAAGAATCTGATGAAGAAGAAAATGAAGAAGAATTTGAAGAAGAAGAAAAATCTATAAGGAGGAGCTATGACACTGAAGCTAAGGGTAAAGGTTTGTTGGAGGATTGCTTTGTATCACTTATGCAAATGGGAGTGTCTTGCTCTGCAACTGCACCAAGTGAAAGGATGGCCATCAGTGCAGTGCTTCCACAAGAATTTGGGCATCTTCTATATCTTCAACACTTAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAAGTAATATAAGTTATTGCAAAGAGCTAAGTATATTATCTGCTGGTCATAACAACTTCATAGGAACAATTCCAGCATGGATAGGAAACTCTTCTACTTTGTCTCAACTTAACCTTGCAGTGAACAACTTGCATGGAAGCATACCAAATGAGGTAGGCCAATTACCAAGCCTGACACTTCTTGCACTGAATGGAAACTACTTGTCTGGAACAATTCCTCCTTCAATTTTTAATATTTCTTCCTTATACTTTTTCACTGTTTCTCAAAATCATCTGCATGGTCACATACCTGCTGATGTTGGTTTTACTCTTCCTAATCTTGGAACATTTGCTGNTGGGGTCAACAATTTCACTGGAANAATTCCTGAATCANTGTCAAATGCATCAAGGCTAGAGATTCTTGACTTTGCTGAAAATGGTCTTGTTGGCACACTTCCNAAGAACATAGGGAGATTGACCCATTTGAAAAGACTCAATTTTGATGTCAATAGACTTGGAACTGGGAAAGCTGGTGACTTGAATTTTCTTGCTTCCTTGGTTAATTGCACTGCTCTTGAAGTTTTGGGTCTTGCTAGAAATAGTTTTGGTGGAGAATTGCCTAGCTCAATTGCTAACCTTTCAACCCATTTGAATACACTTACATTAGGTGGTAATGAAATATATGGAAGTATCCCCATTGGGATCATGANCCTTGTTAACTTAACTGTTCTGGGATTGGAAGAGAACAACCTGAGTGGTTCTGTTCCTGATTCAATAGGTATGCTTCAAAAGTTAGTTGATTTAGAATTGAATAACAACAACTTTTCTGGGGTGATCCCTTCTTCCATGGGAAACTTGACAAGATTAACAAGGCTACTAATGGATGATAACAACTTCGAGGGAACTNTACCAGAAAGTATTGGAAAATGCCAGAGCTTATTGATGCTAAATTTTAGCCATAACAAGCTCAATGGTACCATACCAAGACAAGTACTTGCCTTGTCTTCTCTTTCAATTTACTTGGACTTGTCTCATAATTTTCTGACAGGGTCAGTGCCTATTGAAGTGGGTAAGTTAGTTAATCTTGCTGAATTGGACCTCTCAGAGAACAAATTATCTGGCATGATTCCATCCTCTCTTGGAAGTTGTGTTAGTTTGGAATGGTTACATTTGCAGGTNCTCATGCATCTCAATCTTTCTTACAACGATTTGGAGGGCAAAATACCAATGAATGGAATCTTCAAGAATGCAACTTCCTTTTCAATGCATGGAAACAAGAAGCTTTGTGGTGGTGTCCCAGAGTTAAATTTACCTGCATGCACTATCAAAAAGGCCTCTTTCTTTAAAAAACTTCATGGCCNCAAGGTGGTTATCCCTGTAGCTAGTGCACTTGTATTTGTACTCTTTCTATCTTGTTTTCTTACAGTACTTACGATAAAAAGATCAAAAAAGAAAGCTTCAAGGGCAACAACCACTGCAAATGATTTGGAATTGAATATTTCTTACTCAGAAATTGCAANGTGCACTGGAACCCTTTCAAGTGATGGATCAATTATTGCAATTAAAGTATTGAATCTTGAACAAAGGGGAGCTTCAAAAAGCTTCATTGATGAATGCCAAGTTCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCTATCTCNAGTGTTGATCATCAAGGTAATGACTTCAAAGCTTTGGTGTTTGAGTTCATGTCNAATGGAANTCTAGAAGATTGGTTGCATCCTATAAATAATTTGCACAACCAGACAAAGACATTGACATTTGTCCAAAGACTGAATATAGCAATTGATGTTGCTTGTGCATTGGAATATCTCCACCACTTTTGTGAAACTCCAATTGTCCATTGTGATATAAAGCCGAGCAATGTACTTCTTGACAATGATATGGTAGCCCATGTTGGTGACTTTGGATTAGCANCATTTCTGTTTGAAGAATCATGTGGTTCTCCCAAACATTCAACTGTGTCAGCTAGCCTAAAGGGCTCTATTGGTTATGGGATACTATTGCTTGAGATTTTCACAGGAAAAAAGCCAACAAATGATATGTTTGAAGGTGACATGGGAATTCACCAGTTTGCAGCCTTGGCCTTACCAAATCATGTCATAGATATAATTGATCCTTTTTTGCTCTCTGATCAAGAATTTTATGAAAGAGATGAAGTTTCTACAGAAGAGACAGCAATAAGGAGGGAGCAGGAAGTCTTTGATACAATGGAGAATTGTTTGGTTTCTGTGCTGCAAATTGGAGTGTCATGCTCTGCGACTTCACCAAGTGAACGAATGCCAATGACTGTGGTTGTCAACAAATTGCATGCAATCAAGGACTCATTTAAGACTCAACTAGTTAAAATGAAATAG

Protein Sequence

>Glyur000465s00024382.1
MNYHPSANPKNLLLQILNSFLLLLCMISISLYSPTTAATTLQGNETDLHALLDFKSRIVQDPFHIMSFWNDSIHHCNWVGISCNTSNGRVMQLSLVHLRLSGTLAPSIGNLTFLTTLKLLNNSFHGEFPQEMGKLLYLQQLNSSYNNFGGGIPNLSNCTKLTVLTVGANNLKGTIPTWIGNLSSLSLISLGLNNLHGSIPHEVVPPSIFXLSSLXYFTLTQNHFHGNLPADIGLTLPNLQVFAGGVNNFTGTIPASLLNASRLEVLDLSVNAFTGTLPKNIGVLNKLTRLSFEHNRLGTGKKEDLSFLDSLANCTSLQFLRLGTNNFGGELPNSIAXFSRXXQIFAIGSXXIQGKLPVGISNLDXLSLLSLEGNHLTGSVPDALGKLQNLRECYLNGNQFSGRIPSSLGNLSSVIKLFLEENNFEGSIPSSLGKCXNLLVFSLYLNKLSGTIPKEVFGLSSLALYFDVSYNALSGTLPAEVGKLQNVGGLLLSENNFSGLIPSSLDLSHNNLXGRIPEFLGEFTVLKRLVLSYNDFEGEIPKNGIFKIATSISLIGNNKLCGGIPALNFPSCTIKKASLLEKLHAPKVAIPIAIALLFLLLLSCFLTFFIVRKQRKRTSRSTATKDLEISYSEVAKCTGGFSQENLIGSGXFGSVYKGTLSSDGSIVAVKVXNLQQRGASRSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALIFEFMSNGSLEDWLHPISNMQSQTTKTLLTFIQRLNIAIDVACALEYLHHYCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLLEDSISSSGXAVMSARLRGKRPTDEAFEGGMGIRQFIAMALPNHVMDIIDPSLVAEEESDEEENEEEFEEEEKSIRRSYDTEAKGKGLLEDCFVSLMQMGVSCSATAPSERMAISAVLPQEFGHLLYLQHLNISYNSFGGSIPSNISYCKELSILSAGHNNFIGTIPAWIGNSSTLSQLNLAVNNLHGSIPNEVGQLPSLTLLALNGNYLSGTIPPSIFNISSLYFFTVSQNHLHGHIPADVGFTLPNLGTFAXGVNNFTGXIPESXSNASRLEILDFAENGLVGTLPKNIGRLTHLKRLNFDVNRLGTGKAGDLNFLASLVNCTALEVLGLARNSFGGELPSSIANLSTHLNTLTLGGNEIYGSIPIGIMXLVNLTVLGLEENNLSGSVPDSIGMLQKLVDLELNNNNFSGVIPSSMGNLTRLTRLLMDDNNFEGTXPESIGKCQSLLMLNFSHNKLNGTIPRQVLALSSLSIYLDLSHNFLTGSVPIEVGKLVNLAELDLSENKLSGMIPSSLGSCVSLEWLHLQVLMHLNLSYNDLEGKIPMNGIFKNATSFSMHGNKKLCGGVPELNLPACTIKKASFFKKLHGXKVVIPVASALVFVLFLSCFLTVLTIKRSKKKASRATTTANDLELNISYSEIAXCTGTLSSDGSIIAIKVLNLEQRGASKSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMSNGXLEDWLHPINNLHNQTKTLTFVQRLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLAXFLFEESCGSPKHSTVSASLKGSIGYGILLLEIFTGKKPTNDMFEGDMGIHQFAALALPNHVIDIIDPFLLSDQEFYERDEVSTEETAIRREQEVFDTMENCLVSVLQIGVSCSATSPSERMPMTVVVNKLHAIKDSFKTQLVKMK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00465	40532	54373	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000465s00024382.1	PF08263.7	LRRNT_2	45	84	1.10E-08
Glyur000465s00024382.1	PF00560.28	LRR_1	389	411	0.87
Glyur000465s00024382.1	PF00069.20	Pkinase	643	806	2.10E-30
Glyur000465s00024382.1	PF00560.28	LRR_1	931	950	0.41
Glyur000465s00024382.1	PF00560.28	LRR_1	1299	1321	0.67
Glyur000465s00024382.1	PF00069.20	Pkinase	1448	1599	5.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.055
SRR1783600	control	0.062
SRR1783602	moderate drought stress	0.100
SRR1811619	moderate drought stress	0.090

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.411
DRR006520	Root Summer glycyrrhizin high producing strain	0.310
DRR006521	Root Winter glycyrrhizin high producing strain	0.758
DRR006522	Root Winter glycyrrhizin high producing strain	0.606
DRR006523	Root Summer glycyrrhizin low producing strain	0.112
DRR006524	Root Summer glycyrrhizin low producing strain	0.106
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.154
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.125

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.109
SRR2868004	Drought Stress (root)	0.151
SRR2967015	Control (root)	0.220

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.099
SRR9715740	Leaf	1.168
SRR9715741	Leaf	0.977
SRR9715739	Root	0.016
SRR9715742	Root	0.085
SRR9715743	Root	0.092

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.019
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.247
SRR8400027	Control - Root	0.232