Gene detail information of Glyur000464s00022414 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G47128.1 | 4.00E-126 | Granulin repeat cysteine protease family protein |
| NR | KHN12823.1 | 0 | Cysteine proteinase RD21a [Glycine soja] |
| COG | YP_504536.1 | 4.00E-30 | peptidase C1A, papain [Methanospirillum hungatei JF-1] |
| Swissprot | tr|P43297|RD21A_ARATH | 6.00E-159 | Cysteine proteinase RD21a (Precursor) |
| trEMBL | tr|I1K268|I1K268_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G20930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00464 | 135520 | 137864 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000464s00022414.1 | PF08246.7 | Inhibitor_I29 | 46 | 102 | 4.00E-16 |
| Glyur000464s00022414.1 | PF00112.18 | Peptidase_C1 | 138 | 354 | 8.70E-83 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.956 |
| SRR1783600 | control | 10.963 |
| SRR1783602 | moderate drought stress | 7.035 |
| SRR1811619 | moderate drought stress | 6.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.052 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.135 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.786 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.825 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.159 |
| SRR2868004 | Drought Stress (root) | 46.733 |
| SRR2967015 | Control (root) | 74.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.960 |
| SRR9715740 | Leaf | 9.421 |
| SRR9715741 | Leaf | 7.489 |
| SRR9715739 | Root | 5.836 |
| SRR9715742 | Root | 12.221 |
| SRR9715743 | Root | 9.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.946 |
| SRR8749028 | MeJA induced 9h | 9.958 |
| SRR8749029 | MeJA induced 9h | 5.010 |
| SRR8749030 | Uninduced | 3.984 |
| SRR8749031 | Uninduced | 1.546 |
| SRR8749032 | Uninduced | 5.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.339 |
| SRR8400027 | Control - Root | 7.716 |