Gene detail information of Glyur000464s00022406 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67210.1 | 7.00E-120 | Protein of unknown function (DUF579) |
| NR | XP_004509113.1 | 0 | PREDICTED: protein IRX15-like [Cicer arietinum] |
| COG | YP_005070644.1 | 1.00E-25 | TPR domain protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q9FH92|IX15L_ARATH | 1.00E-160 | Protein IRX15-LIKE |
| trEMBL | tr|A0A072UQ49|A0A072UQ49_MEDTR | 0 | Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KEH31471.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00464 | 109933 | 110889 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000464s00022406.1 | PF04669.8 | Polysacc_synt_4 | 94 | 277 | 1.00E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 52.460 |
| SRR1783600 | control | 52.544 |
| SRR1783602 | moderate drought stress | 21.462 |
| SRR1811619 | moderate drought stress | 22.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.306 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.675 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.592 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.919 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 91.194 |
| SRR2868004 | Drought Stress (root) | 70.175 |
| SRR2967015 | Control (root) | 68.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.600 |
| SRR9715740 | Leaf | 10.167 |
| SRR9715741 | Leaf | 5.688 |
| SRR9715739 | Root | 37.231 |
| SRR9715742 | Root | 49.473 |
| SRR9715743 | Root | 51.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.774 |
| SRR8749028 | MeJA induced 9h | 0.365 |
| SRR8749029 | MeJA induced 9h | 0.989 |
| SRR8749030 | Uninduced | 2.495 |
| SRR8749031 | Uninduced | 0.952 |
| SRR8749032 | Uninduced | 0.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 74.645 |
| SRR8400027 | Control - Root | 115.747 |