Gene detail information of Glyur000463s00026772 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G30390.2 | 6.00E-134 | Transmembrane amino acid transporter family protein |
| NR | XP_006603940.1 | 0 | PREDICTED: sodium-coupled neutral amino acid transporter 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9C9J0|LHTL5_ARATH | 2.00E-08 | Lysine histidine transporter-like 5 |
| trEMBL | tr|K7MWE5|K7MWE5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G04990.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00463 | 56984 | 67468 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000463s00026772.1 | PF05056.7 | DUF674 | 1 | 126 | 5.10E-18 |
| Glyur000463s00026772.1 | PF01490.13 | Aa_trans | 220 | 605 | 3.30E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.825 |
| SRR1783600 | control | 19.163 |
| SRR1783602 | moderate drought stress | 26.938 |
| SRR1811619 | moderate drought stress | 26.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.240 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.379 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.618 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.816 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.673 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.430 |
| SRR2868004 | Drought Stress (root) | 50.132 |
| SRR2967015 | Control (root) | 58.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.491 |
| SRR9715740 | Leaf | 1.991 |
| SRR9715741 | Leaf | 4.164 |
| SRR9715739 | Root | 8.364 |
| SRR9715742 | Root | 14.399 |
| SRR9715743 | Root | 12.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.905 |
| SRR8749028 | MeJA induced 9h | 32.342 |
| SRR8749029 | MeJA induced 9h | 15.980 |
| SRR8749030 | Uninduced | 24.894 |
| SRR8749031 | Uninduced | 27.063 |
| SRR8749032 | Uninduced | 22.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.025 |
| SRR8400027 | Control - Root | 32.580 |