Gene detail

Gene detail information of Glyur000463s00026766

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	3.00E-11	disease resistance family protein / LRR family protein
NR	KHN28812.1	8.23E-91	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]
Swissprot	tr\|P10978\|POLX_TOBAC	3.00E-55	Endonuclease
trEMBL	tr\|A5C944\|A5C944_VITVI	2.00E-80	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN84102.1}

Sequence

Transcript Sequence

>Glyur000463s00026766.1
ATGGGAGTTGAGTCCATCACAATGTTTCGCTGTGGGTTCAGTTTTCTGTTTTTGTGCATATGTTGTTTATGTGCTGGAAGTTCCCATGCTATCAACAGGTGTGCGGAGACAGAGAGGCAAGCTCTCCTCAAGTTTAAAGCTTCTCTCATTCATGGAAGGCAAGGTCTAGCCTCATGGAAGGGTGCAGATTGTTGCAAATGGAAAGGAATCTCGTGCGATAATTTAACTGGTCATGTCACCAGTTTGGATCTCCAACATGGGGGGATTAAAGCAAAGGGTTTTGTTCAACCACTAGGAGCTCGAAGATTTTCGCTTAGCGCGGAATATGCAGACTTGCAGGGTTCCTGGTCTAAATTCGCTCAACCAAACAGGATTCGCTCAGCGCAGAATTCAGCATCAAAACAACAAGTGGCGCCGTCTGTGGGGAATTGGATCGAATCAAGAACTACAAGAATGGGGTCAGCAAGATTTGATATAGAGAAATTCTCGAGAAACAATGACTTTGGACTATGGAGAATTAAGATGGAGGCTATCTTGGTTCAGCAAGGGGTTGCAGAAGCGTTGAAGGGAGAGGCGAAAATGTCACCTACCTTATCGCAAGAAGTCAAACTGCAGATGATCAAAAAGGCAAGAAGTGCAATCATCTTGTGTCTTGGAGATAAGGCACTAAGAGAAGTGGTTAAGGAGAAGACAGCAGCAGCGATGTGGACGAAGTTGGAGTCCCTATACATGACGAAGTCCCTAGCACACCGGTTATGTCTAAAGCAACAACTGTATTCATTCCGAATGAATGAGTCAAGATCATTGGCTCTACTGCTCCTAAGCTCTTTGCCTAAAACCTATGAGCACTTCAAGGATGCCTTATTGTATGGCAAAGACCAAACCATCACTCTAGAAGAGGTGGTAACCGCAATACGCACCAAAGACTTGCAAAAACAGCAAGACCAAAGAAATGATGGCGATGGTGAGAGCTTGAATGTGCAGAGGGGGAGGAATGGCAAGAAAGGGAACAAGGGAAAGAAGAGGTCCAAGTCAAAATCCAAGTTTGCAAAGGATGGTTCCAAGGACAACAAGAACAAGTGCTTCAACTGCAACAAGTTGGGGCATTGGCACAAGGATTGTCCAGAACCATTGAGGAGGAGAAACCGTAATGATGCAAGTTCAGACGAGACAGCGGACATAGCAGTTGCTATGGAAGGCTATGAGTCCGCAGACGCGTTGGTAGCTTCAAGTTCAGATTCGCAGAGGAATTGGGTTATAGATTCCGGTTGTTCATATCACATGTGCCATAGAAGGGAGCTCTTCAAGTCCTTAGAGTTGAAGGAAGGAGGAACGGTGCTTCTAGGCGACAACAAATCATGTAAGGTTCAAGGTATGGGAACAATCCAACTCAAATTGTCGGATAACCGTGATTTCCTATTGCAAGGAGTGAGGTATGTCCCTGAACTTAGAAGAAATCTTTTGTCTATAAGCATGTTTGATAAGTTGGGTTATGTGATTGTAATTGAACATGGCATGCTTAAGATTTCTAGTGGTGCTATGATAGTTAAGGGAACCAAGATTAATGGTTTGTACATTTTGTGTAGTTCCACTGTTATTAGTCATGCATCATTAGCTAACCAATCACTAGAAAGTGAGTCTAAGGTGTGGCATCATAGGTTTGATCATGTTGGTAAGAAAGGTAATCAACTAGGATCTAAACCAAGGGTCTTAAGAACTAACAATAGCCTGGAGTTTGGTTCAGAGCAGTGTGATAAGTTTTGCAGGAAGAAAGGAGCCAAGTGTAGCAAAACCGTCACAAGTACTTCGCAGCCAAAGGGCATGGTTGTGAGGAGGTGTCTCAGTGGTTATCCTCAAGGCATGAAGGGTAACAGGTTGAGGAGTTTGTCTTCAGGCGGAGGCTCAAGTCGCTTCATCGGTAGAGATGTCATGTTTGATGAGAAAAGAATGGCCATGGCAAACAAGGACATTGATGGAAGCAGTGCAGAAAAAGTGAGCAATGAGACAGCTCAGCTTGAGGTGGAGTTTCCAAGTAACATTGCAAGTGAAGACAGTCCCCAACAAGAGAAAGAAAAAGTTGAAGATCAACCGACACAAGAGGAATCAATTTGTAAGCTAACAAAGGAAAGGAGAGAAAGCAAGAGAGTATCTCCTAAGGGATTCAGAGGTGCAGATTTGATCAGTTTTGCTCCAAGTGCTACTCAAGGGATTGAAGGCTCACAATCAAAGGATCCAATGCAGAGGGGTCAAGGAGAAGCAAAGGAGAGCAGCAAGTTTCATGAAGTAGATGTGGTGGAGGCAAGTGCAGTTGCAAGTGCGAAGTATGCAACAGAGAAGAAATCCATAGATAAGTTTGCAAGGTCACCACCAAGGATCAAGTTCAAGAGGCGCTTGGATTTGATCAAACTTCAGAGAAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00463	8144	10825	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000463s00026766.1	PF08263.7	LRRNT_2	36	73	5.70E-11
Glyur000463s00026766.1	PF14227.1	UBN2_2	229	269	2.60E-10
Glyur000463s00026766.1	PF00098.18	zf-CCHC	360	376	8.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.523
SRR1783600	control	0.440
SRR1783602	moderate drought stress	0.089
SRR1811619	moderate drought stress	0.126

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.119
DRR006520	Root Summer glycyrrhizin high producing strain	0.043
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.176
DRR006524	Root Summer glycyrrhizin low producing strain	0.156
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.052
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.025

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.071
SRR2868004	Drought Stress (root)	15.749
SRR2967015	Control (root)	5.631

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.181
SRR9715740	Leaf	1.376
SRR9715741	Leaf	0.600
SRR9715739	Root	0.234
SRR9715742	Root	1.196
SRR9715743	Root	0.935

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.040
SRR8749028	MeJA induced 9h	0.085
SRR8749029	MeJA induced 9h	0.075
SRR8749030	Uninduced	0.013
SRR8749031	Uninduced	0.086
SRR8749032	Uninduced	0.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.015
SRR8400027	Control - Root	1.042