Gene detail information of Glyur000462s00025048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03090.1 | 2.00E-84 | expansin A15 |
| NR | XP_003621257.1 | 2.20E-130 | Alpha-expansin [Medicago truncatula] |
| Swissprot | tr|O80622|EXP15_ARATH | 1.00E-120 | Expansin-A15 (Precursor) |
| trEMBL | tr|G7L212|G7L212_MEDTR | 8.00E-131 | Expansin A10 {ECO:0000313|EMBL:AES77475.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00462 | 49340 | 51563 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000462s00025048.1 | PF03330.13 | DPBB_1 | 41 | 118 | 1.70E-26 |
| Glyur000462s00025048.1 | PF01357.16 | Pollen_allerg_1 | 129 | 207 | 3.50E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 83.027 |
| SRR1783600 | control | 84.035 |
| SRR1783602 | moderate drought stress | 3.437 |
| SRR1811619 | moderate drought stress | 3.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.705 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.325 |
| SRR2868004 | Drought Stress (root) | 1.456 |
| SRR2967015 | Control (root) | 2.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.966 |
| SRR9715740 | Leaf | 0.561 |
| SRR9715741 | Leaf | 0.169 |
| SRR9715739 | Root | 30.991 |
| SRR9715742 | Root | 58.369 |
| SRR9715743 | Root | 48.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 221.018 |
| SRR8400027 | Control - Root | 338.474 |