Gene detail

Gene detail information of Glyur000462s00025044

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01180.1	0	starch synthase 2
NR	KHN13221.1	0	Granule-bound starch synthase 2, chloroplastic/amyloplastic [Glycine soja]
COG	YP_003807441.1	6.00E-87	glycogen/starch synthase [Desulfarculus baarsii DSM 2075]
Swissprot	tr\|Q43093\|SSG2_PEA	0	Granule-bound starch synthase 2, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|K7LXH7\|K7LXH7_SOYBN	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}

Sequence

Transcript Sequence

>Glyur000462s00025044.1
GATTTGTGGTTGTCTTCTCATCCAAAACATCATGCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAATCATCCAATTTCCATTCCATGGTTTCCGTTTTCCACTCTCAGCTCCAAAGAAAAAGCCCTGACCTTTGATTCATTCTTGCACCATTTTCTCAACTTGGGTCTACCCCAATTGCAAAAACTCCACTAAGGCTTTGTTCATCTCTCAGTTACACTTTCTGGGTCTTCCCCTTTTTCACCAAAGCTCTTGTTTTTGTTGATTCCTTGATGATGTTATCACTGGGTTCTTTTCCATTTCTTGTGGAACCTAATGCTGCTGACAGTACCACTGTGCTACTTCTTCACACTACTAGGACTCTCAAATTCACACCAAAATCTAGCACTGCAAGTGCTGCTGCTGCTTCAGCAGCATTTAGCAGGGGTTTTGGTCGTGGTAGATTGAACCATAGGTGTAAGCACATAAGAGCTTTAGGTAAGAATTCTGAGACAAGTGAGGGTAAGGATGCGGAGTCAGAGGAGGATGTGCTCCAGGCCACCATTGAAAAGAGCAGAAAGGTTCTTGCTTTGCAAAAGGAACTTCTTCAACAGATTGCAGAAAGAAAGAAACTGGTTTCTTCTATAAATAGTGACAACATTCCTGGATCAGAAGGAAACAGTATTTCTTATGAACAAAGTGACGAAACTCTGTCAAGTGACTCAAATCCACAGAAACTTTCTAGTTCTACCAGCAGAGGCAATGCTGTTGAAAACCAAAATGGTGGCACTGTTTTAAGCAACCGTGTACGCTCCAGCGAAAAGGAGATACTAGATGTCTCATCTGTAGGCATTGATCAAAGTTTTGATGAAGGAAAAAAGGAAGATTATAAATCTTCACCTTCTGAAATGGCTTCATCTATGCCATATTTCGATGAACAATTTAAAAGCGAGAGATATGAGAGAATTAGGCCTAGTACGCTGCCGAATAAGAAATATGAGACATTTAGGCCGAACAACGTTGCAAATAGCATTGAAACTTCCACTCTAAAGTTTGAAAATCTGGAAGGTGTGAGTGAACCAAGTCCAAAGGAGGTCACTAATGATGCTGACAATGTTGAGAGTGAAGGTGAAAAATCCCCACCATTGGCTGGGGCCAATGTCATGAATGTTATATTAGTTGCAGCAGAATGTGCTCCTTGGTCAAAAACAGGACTCTCCCTCTTTTCCTCTGCCAGACCAATTCTTCAATCCTCGCTTGTCCTTCTGTATGTGCTGCTTTATTTTTATGTAATTTACTGGCTCATACATGAACTAATAGGTGGGCTTGGAGATGTTGCTGGATCATTACCAAAGGCTTTGGCTCGGCGTGGACACAGAGTTATGATTGTTGCACCACGGTATGGTAATTACGCTGAAGCACAAGATATAGGAGTGCGGAAAAGATACAAAGTAGATGGTCAGGACATGGAAGTAACATATTTCCACGCTTATATTGATGGTGTTGACTTCATTTTTATCNACAGTCCAGATTTTCGCCATCTAGAGAATGACATATATCGCGGAAAACGAGTGATTCCATGGTATGTTCCATGTGGTGGTGTTTGCTATGGAGATGGAAATCTGGTCTTCATAGCAAATGATTGGCATACTGCATTGCTGCCAGTGTATCTGAAAGCATATTATCGTGACAATGGTTTGATGACGTATACAAGATCCGTTCTCGTGATTCACAACATAGCTCACCAGGGTCGTGGACCACTTGATGATTTCAACTATGTGGATTTACCTGGACACTACATGGACCTTTTCAAATTATACGACCCNGTTGGAGGCGAGCACTTCAATATCTTTGCAGCCGGTTTAAAAACAGCGGACCGGATCGTCACCGTTAGTCATGGATATGCATGGGAGCTTAAGACTTCTGAAGGGGGTTGGGGTTTGCATGGGATCATAAATGAGAATGACTGGAAATTTAGGGGCATTGTGAATGGCATTGATACAAAAGATTGGAACCCTCAATATGATGTTCACTTGACATCAGATGGCTACACCAATTACACCCTCAACACCCTCCAAAGTGGCAAGCGTCAGTGTAAAGCGGCCTTGCAAAAGGAGATCGGTTTGCCTGTTCGCGAGGACGTTCCGATAATCGGTTTCATCGGAAGGCTGGATCAACAGAAAGGTGTTGATCTCATAGCCGAAGCGATTCCTTGGATGGTAGGCCAGGATGTGCAACTCGTCATGCTGGGAACTGGAAGGCCTGATTTGGAAGAGATGCTGAGGCAATTCGAGTGCCAACACAAGGACAAAGTCCGCGGATGGGTCGGCTTCTCTGTGAAGATGGCTCACAGGATAACAGCAGGTTCAGATATATTGCTCATGCCATCAAGGTTCGAGCCGTGTGGGTTGAACCAACTCTATGCCATGAATTACGGAACGGTTCCTGTTGTACACGGGGTCGGTGGACTCAAAGATACGGTGCAGCCGTTCAATCCGTTCGAGGAGTCGGGACTTGGTTGGACATTTGATAGTGCTGAAACTCAAAAGTTGATACATGCATTAGGGAACTGCTTGTTGACCTACAGGGAGTATAAGAAGAGCTGGGAAGGGCTTCAGCGGCGAGGGATGTCGCAGGATCTTAGTTGGGACAATGCTGCTCAGCAGTATGAGGAGGTCCTTGTTGCTGCCAAATACCAATGGTGAATTTCTTGGCATGCTGTAACTCCATCTTAGCAGATTGATCAATATATGCTGAATGGAACTGAGCCAGTGGTTTATTTTCTACAAATCTGCCACTGCTGCTAGGGTTTTGGAGGAACATTTTTGTCATGTAAACTCAAGATTATGTAATACAGTTGGTACATAGTGTCATGTCTCTTGGCACATGCCAATGTTGTTAACTGAAGTCAATTGACCAAAAAATAAATTAAGATTAGATACTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00462	17503	24049	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00703	glgA	EC:2.4.1.21	Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500
			Biofilm formation - Escherichia coli	map02026
			Biofilm formation - Escherichia coli	map02026

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function
GO:0009011 starch synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000462s00025044.1	PF08323.6	Glyco_transf_5	342	556	1.30E-47
Glyur000462s00025044.1	PF00534.15	Glycos_transf_1	614	756	5.30E-17
Glyur000462s00025044.2	PF08323.6	Glyco_transf_5	292	520	8.80E-56
Glyur000462s00025044.2	PF00534.15	Glycos_transf_1	578	720	4.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	76.368
SRR1783600	control	77.240
SRR1783602	moderate drought stress	59.665
SRR1811619	moderate drought stress	59.266

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	123.962
DRR006520	Root Summer glycyrrhizin high producing strain	123.168
DRR006521	Root Winter glycyrrhizin high producing strain	14.113
DRR006522	Root Winter glycyrrhizin high producing strain	13.608
DRR006523	Root Summer glycyrrhizin low producing strain	105.618
DRR006524	Root Summer glycyrrhizin low producing strain	105.716
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.451
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.285

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.022
SRR2868004	Drought Stress (root)	47.299
SRR2967015	Control (root)	49.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.117
SRR9715740	Leaf	72.973
SRR9715741	Leaf	67.594
SRR9715739	Root	38.556
SRR9715742	Root	97.999
SRR9715743	Root	89.938

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.186
SRR8749028	MeJA induced 9h	8.849
SRR8749029	MeJA induced 9h	3.994
SRR8749030	Uninduced	2.948
SRR8749031	Uninduced	3.878
SRR8749032	Uninduced	4.718

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	180.051
SRR8400027	Control - Root	200.534