Gene detail

Gene detail information of Glyur000461s00027799

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24270.2	4.00E-83	Calcium-binding EF-hand family protein
NR	XP_004502645.1	2.77E-139	PREDICTED: calcineurin B-like protein 4-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O81223\|CNBL4_ARATH	5.00E-108	Calcineurin B-like protein 4
trEMBL	tr\|G7J6W3\|G7J6W3_MEDTR	4.00E-136	Calcineurin B-like protein 4-1 {ECO:0000313\|EMBL:AES72495.1}

Sequence

Transcript Sequence

>Glyur000461s00027799.1
GTGCTTCGTTCGATTATAAAGTTGCAACAACACACACTGCAAATTGGAACACAAACGTTTGAGAGGAGACTACTGCTGCTAACACTATATCTCCATCTCCCATTTCTCTGCCCTGAGAAAGCCATGTCCTTAATTGATTGAGCTTACCCTACTACAGTATATGTTATTTATTAAATTATTAACTCAAGAAGTTCAACTTTGGCGCTTATATACTTCTCATCACATAACAGATATTCAAGTCCCGCCGCGTTTGTCCCGGTGGTTAGAAATGCGGTAGCATGAATTCCAATGTTGGTGAATAAAGAACTAATAAAAGGTTTGCTTCTGGAAACTGAGTTTGGAGATACTGCAACTGCAATACAAACACACACTATATTGTTTGTCAAGAAATTTGGGGAGTGAGTTTTGTGGTTTTATTTAATGGGCTGCTATTGTTCTACTTCAAAGAAAGCCGAAATACCAGGTTATGAGGATCCCACCGTTCTTGCTTCTGAGACACCTTGTGAGTATCCTTCATTCACTGTAGAGGCATTATATGAACTCTATAAGAAGTTGAGCAATTCAATCATTGAGGATGGTCTTATTCACAGGGAAGAATTCCAGCTAGCACTCTTCAGGAATAAAAACAAGAGAAATTTGTTTGCAGACAGGATTTTTGACTTATTTGATGTCAAGCGCAATGGGGTCATTGAGTTCGGGGAATTTGTTCGATCACTGGGTGTTTTCCACCCAAATGCGGCTTTAGAAGACAAGATTGCATTTGCTTTTAGGTTGTACGATCTGAGGCAAACCGGGTATATTGAACGAGATGAGTTAAAGGAGATGGTATTAGCACTTTTGCATGAATCGGATCTTGTACTTGCAGATGATATGATAGAAACCATTGTGGATAAGACTTTTAAAGATGCGGATGCAAAAGATGATGGGAGGATCGATCAAGATGAGTGGAAAGCGTTTGTCTCTAAGCATCCATCCTTGATAAAGAACATGACTCTTCCATATCTAAAGGATATTTCCTTAGCATTTCCCAGTTTTGTTGTAAGAACAGAAGTTGAAGACTCAGAGGTGTGACTTGGGAAGGTTTTTGCTTCACTGAGAGCAATTACACAGGTGGTTTGAGAGCGGAAGTTCTNGACTTGCTATAAGCTAACCCCATAAGTGAAGTGTTATTCACTTATTCTAGTGCAAGTCTAGCTTGTACATATTTAGTATATACGAGAGATGCAAAAAGTAGAGTAGTGGACCGTGTAACTGGGCCATCTTGCAGCTGCTTGAGAGTTTAGAGATGAGAGAATTTTGTGAGTGAAAGATATTAACCTTTGATTGTTCCAATAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00461	93781	104251	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000461s00027799.1	PF13833.1	EF-hand_8	51	97	0.0002
Glyur000461s00027799.1	PF13499.1	EF-hand_7	113	179	6.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.912
SRR1783600	control	3.799
SRR1783602	moderate drought stress	10.358
SRR1811619	moderate drought stress	10.332

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.077
DRR006520	Root Summer glycyrrhizin high producing strain	6.286
DRR006521	Root Winter glycyrrhizin high producing strain	0.578
DRR006522	Root Winter glycyrrhizin high producing strain	0.429
DRR006523	Root Summer glycyrrhizin low producing strain	2.900
DRR006524	Root Summer glycyrrhizin low producing strain	2.777
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.264
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.359

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.753
SRR2868004	Drought Stress (root)	45.672
SRR2967015	Control (root)	65.713

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.626
SRR9715740	Leaf	4.779
SRR9715741	Leaf	8.243
SRR9715739	Root	1.131
SRR9715742	Root	1.958
SRR9715743	Root	0.975

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.950
SRR8749028	MeJA induced 9h	53.829
SRR8749029	MeJA induced 9h	42.893
SRR8749030	Uninduced	72.544
SRR8749031	Uninduced	88.647
SRR8749032	Uninduced	67.426

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.059
SRR8400027	Control - Root	11.604