Gene detail

Gene detail information of Glyur000461s00027793.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53370.1	0	pectin methylesterase PCR fragment F
NR	XP_004502642.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cicer arietinum]
COG	YP_006407803.1	5.00E-51	pectin methylesterase [Belliella baltica DSM 15883]
Swissprot	tr\|Q9FK05\|PME61_ARATH	0	Pectinesterase 61
trEMBL	tr\|G7J6V7\|G7J6V7_MEDTR	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000461s00027793.1
ATGGAATACGGAAGGTTAGGACCTTCCGAACCTGGAGGCTCGTCACACTCCGAACCTCCAAGACCGAGATCTAAAAAGAAGCTCATTCTTCTCTCACTCCTCGCCGTCGCTCTTATCGTTGCCTCCGTCGTCTCCGCCGTGGTGGTCATCGGAATCCGCTCACGCGCGGAGAAGAATAACAACCCCAACCTCCTCCGGCGGAATCCGACGCAAGCGATCTCTCGCACGTGCAGCAAGACACTGTTCCCCACGCTTTGTGTGAACTCGCTCCTCGAATTCCCTGGATCCAACGTGGCAACAGAGAAGGACCTCGTCCACATTTCCCTCAACATGACGCTCCAACACCTCTCCAAGGCACTCTACTCCTCCGCCGCAATCTCCTCCTCAGGCGCCGCCGTAACAATGGACACACGCGTACGCGCCGCCTATGAAGACTGCCTCGAGCTACTCGACGACTCCGTTGACGCNCTCGCACGCTCCCTCTCCTCAGTCCGCGGCGGCTCCTCCTCCGGCACCGTTAGTTCCCTCGGCTCCGGTTCCTCCTCCTCCGACGTGCTGACGTGGCTCAGTTCCGCACTCACGAACCAGGACACGTGTTCCGAGGGCTTTGCCGACACTTCCGGCGCCGTGAAGGACCAGATGGAGAACAACCTGAAGGACTTGTCGGAGCTTGTGAGCAATTGTCTTGCGATTTTCTCGGCGGTTGGTGCCGGCGATGACTTTACCGGNGTACCTATACAGAACAGGAGACGGTTAATGGCAATGCGGCGAGAGGAGGAGGAGAACGGTTATTTTCCGGTGTGGTTGAATAAACGTGACAGGAGGTTGCTGGGATTGCCTGTGTCGGCGGTGCAGGCTGATGTTGTGGTCTCGAAGGACGGTAANGGAACGGTGAAGACTATTGAAGAAGCTATTAAGAAGGTGCCGGAGTACGAAGAGGAGAATTTAAAGATTGGTAGGAAGAAAACCAATGTGATGATCATGGGAGACGGGAAGGGCAAGACGGTCATTACAGGCGACAAAAATGTTAAGGATGGCAATGTGACCACATTTCACAGCGCATCCTTTGCTGCTACTGGTCCAGGTTTCATTGCAAGGGACNTAACGTTCGAGAACTACGCCGGTCCGGCAAAGCACCAAGCGGTGGCCCTCCGCATCGGAGCGGACCACGCGGTGGTGTACCGTTGCAACATCATCGGATACCAGGACACAATGTATGCACACTCAAACCGCCAATTCTACCGCGAGTGTGACATCTACGGCACTGTTGACTTCATCTTCGGCAACGCAGCAGTGGTTTTCCAAAACTGTAGCCTCTACGCACGAAAGCCCATGCCCCAGCAGAAGATAACCATAACGGCCCAAAACAGAAAGGACCCAAACCAGAACACGGGTATCTCCATACACAACTGTCGGATCCTCGCAACCCAGGATCTAGAAGCTTCCAAGGGTAGCTTCCCAACCTATCTGGGCCGTCCTTGGAAGCTTTACTCTAGAACCGTGTACATGCTATCCTACATGGGTGATCACGTGCATCCACGTGGATGGCTCGAGTGGAACACATCGGGGTTCGCGTTGGACACGTTGTACTATGGCGAGTACATGAATTATGGGCCGGGTGCGGCTATTGGGCAACGGGTTAAATGGCCCGGGTATCGGGTCATAACGTCCACGGTGGAAGCAAGTAGGTTCACGGTGGCCCAATTCATTTCGGGCTCGTCATGGTTACCATCCACGGGTGTGGCATTCATAGCTGGCTTATCCACTTGAATTGAATTCCACTTCTTGCTGCAAAGTATAGATCATGCATGATATACCTTTTCAATCTTCTCCAATCTCTCATTCCATCATAGTTCAAGCTAATTCGTTGTGAACGTATATTTTTATAAAGGTTTTATTTGGTAATTGTACTAAACGAATGAAAATATAGTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00461	44715	49352	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000461s00027793.1	PF04043.10	PMEI	70	231	3.10E-32
Glyur000461s00027793.1	PF01095.14	Pectinesterase	287	572	3.60E-130

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	262.695
SRR1783600	control	263.597
SRR1783602	moderate drought stress	332.316
SRR1811619	moderate drought stress	329.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	76.346
DRR006520	Root Summer glycyrrhizin high producing strain	73.715
DRR006521	Root Winter glycyrrhizin high producing strain	1.640
DRR006522	Root Winter glycyrrhizin high producing strain	1.511
DRR006523	Root Summer glycyrrhizin low producing strain	41.139
DRR006524	Root Summer glycyrrhizin low producing strain	41.795
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.668

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.850
SRR2868004	Drought Stress (root)	96.342
SRR2967015	Control (root)	56.339

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.069
SRR9715740	Leaf	3.716
SRR9715741	Leaf	9.551
SRR9715739	Root	292.401
SRR9715742	Root	226.095
SRR9715743	Root	239.707

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.575
SRR8749028	MeJA induced 9h	5.134
SRR8749029	MeJA induced 9h	19.010
SRR8749030	Uninduced	2.114
SRR8749031	Uninduced	0.119
SRR8749032	Uninduced	4.937

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	230.401
SRR8400027	Control - Root	387.573