Gene detail

Gene detail information of Glyur000461s00027791

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44800.1	2.00E-50	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003602235.1	2.08E-168	Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula]
COG	YP_004572412.1	4.00E-29	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q07512\|FLS_PETHY	2.00E-58	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|G7J6V4\|G7J6V4_MEDTR	8.00E-169	Flavonol synthase/flavanone 3-hydroxylase {ECO:0000313\|EMBL:AES72486.1}

Sequence

Transcript Sequence

>Glyur000461s00027791.1
GTCACAAATATCAATGGCTTGCAGGGCAGCTACTACCATTTCGTCGTCATCATCAGAACCGGNAAAGCTTGTTCATGCATCTGAAATTTCAAGCATCAAAGCCTTTGCAGAATCGAACGGAGCCTCTCCCATTCCTTCCACCTACCACTCCCTCACAGGACCCCGTGACGATGATGTTGTTGCAGATAATTACGAACTCGCAGCTTCCATCCCACTCATCGACTTGTCTCTCCTCACTTCCAAATGACCCTCAAATCCACGCCAAAGCTGTTCTTGAACTCGGCAAGGCCTGTTCCGAATGGGGTTTCTTCATGCTCACAAACCATGGAATTCCCAAGAATCTAATGGAGGAGGTGATGAAGAAGTCTCACGAGTTTCATGATCTACCGGTGGAGGAAAAGGAGGAGTTTGGTGACAAAGGGCCTTTCACACCCATTAGGCATGGCACCAGCTTCCATCCACAAGAAGAGAAGGTTCATTATTGGAGAGATTATCTCAAAGTCATGACATTTCCTGAATTCAACTTCCCCCACAAACCACCGGGTTATAGGGAGCTTGGGTTTGAGTACAGCAGAAAAATCAAAGCTGTGGCGAGGAGCTTGCTTCAAGGGATATCAGAGAGCTTGGGATTAGAACCCAATTCCATAATTGAGTCCTCTGGTTTTGACCCTGGCTTACAAATCTTTGCCGTGAACCTTTACCCTCCATGTCCACAGCCACACCTTGCTCTTGGCTTGCCTCCACACTCAGATCATGGCTTCTTGACCTTACTCACCCAAAATGGAATTGGAGGGCTTCAGGTTAAGCACGATGGCAAATGGCTCAACGTTAATCCCCTTCCCAATTGCCTAGTTGTCAACATTGGAGATCAACTTGAGGCTGTGAGTAACGGGAGGTACACAAGTGTCTTACACAGAGCAATGCTCAACAACAGAGACACAAGGATCAGTGTTGTGCTGGTGAACGGACCCGCACTAGATAAGGAAATTGGACCTGCCCCCGAGCTATTGGAGAAAGAAAAGCCATTGTTCAAAAGCATCAAGTACCAAGACTACTTCCAGGTTCAGCAGAAGACACTACTTGTCGCTAAAAGTGGCTTGGACCTGATTCGCCCTAATTTGGTGAACAACAAAACATGGACTTCAAAGAGAGAGATGAAGAGAGAGGCAGCCATGGGGCTGCTTAGGAGAGAACGAGCAACATCGATCGGAGATCATAGATTTGGGAGGGAGATCAGAGAAAATCACTGCCGCTCACTGGAAGAGGAGATCGCACAATCGCACAAAGATCAAGGGCGGGGGAGGTTGTCGTCGCCGAGGGGGAAGAAGGAGGCTGCCGTCGCCGTTGTCAAGCGTAGAGAAGAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00461	11156	18664	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000461s00027791.1	PF14226.1	DIOX_N	60	147	3.70E-19
Glyur000461s00027791.1	PF03171.15	2OG-FeII_Oxy	204	295	1.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.350
SRR1783600	control	2.312
SRR1783602	moderate drought stress	4.412
SRR1811619	moderate drought stress	4.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.474
DRR006520	Root Summer glycyrrhizin high producing strain	3.012
DRR006521	Root Winter glycyrrhizin high producing strain	6.022
DRR006522	Root Winter glycyrrhizin high producing strain	6.349
DRR006523	Root Summer glycyrrhizin low producing strain	0.161
DRR006524	Root Summer glycyrrhizin low producing strain	0.161
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.030
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.853

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.541
SRR2868004	Drought Stress (root)	0.803
SRR2967015	Control (root)	0.112

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.605
SRR9715740	Leaf	11.268
SRR9715741	Leaf	11.209
SRR9715739	Root	0.054
SRR9715742	Root	1.099
SRR9715743	Root	2.348

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.078
SRR8749028	MeJA induced 9h	0.123
SRR8749029	MeJA induced 9h	0.045
SRR8749030	Uninduced	0.248
SRR8749031	Uninduced	0.271
SRR8749032	Uninduced	0.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.496
SRR8400027	Control - Root	1.795