Gene detail information of Glyur000459s00027591 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77550.1 | 0 | tubulin-tyrosine ligases;tubulin-tyrosine ligases |
| NR | KEH37583.1 | 0 | tubulin-tyrosine ligase family protein [Medicago truncatula] |
| trEMBL | tr|A0A072V887|A0A072V887_MEDTR | 0 | Tubulin-tyrosine ligase family protein {ECO:0000313|EMBL:KEH37583.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00459 | 156169 | 162761 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000459s00027591.1 | PF03133.10 | TTL | 580 | 807 | 9.60E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.726 |
| SRR1783600 | control | 15.379 |
| SRR1783602 | moderate drought stress | 16.191 |
| SRR1811619 | moderate drought stress | 15.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.607 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.183 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.476 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.803 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.243 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.425 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.674 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.675 |
| SRR2868004 | Drought Stress (root) | 16.423 |
| SRR2967015 | Control (root) | 17.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.501 |
| SRR9715740 | Leaf | 7.161 |
| SRR9715741 | Leaf | 6.310 |
| SRR9715739 | Root | 2.999 |
| SRR9715742 | Root | 10.530 |
| SRR9715743 | Root | 8.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.634 |
| SRR8749028 | MeJA induced 9h | 18.996 |
| SRR8749029 | MeJA induced 9h | 15.832 |
| SRR8749030 | Uninduced | 1.802 |
| SRR8749031 | Uninduced | 1.193 |
| SRR8749032 | Uninduced | 2.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.754 |
| SRR8400027 | Control - Root | 23.656 |