Gene detail

Gene detail information of Glyur000459s00027590

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G06040.1	1.00E-128
NR	KEH37577.1	0	Rad7, putative [Medicago truncatula]
COG	YP_008196.1	5.00E-08	hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q9LPL4\|SKP2A_ARATH	7.00E-12	F-box protein SKP2A
trEMBL	tr\|A0A072V6W0\|A0A072V6W0_MEDTR	0	Rad7, putative {ECO:0000313\|EMBL:KEH37577.1}

Sequence

Transcript Sequence

>Glyur000459s00027590.1
GGAAGTGTGGGAAGGAAGTTTCGTTTCTCATCAGTCGTCTTCAACTCTTCACGATAAACGCCGTCTCTTTGTCTACTGTATTAAGTGTGCGGTTACTCTCCACTCTCCACGTCTCTTTTTCCCTCCAAATCTTTTCATTTTCCCTCCATCCCTCACTCACTCTCACTCACACTCACACTCACACTCACACCGATTCTCATTCCCTTCCATTTCCACAAATCCTCCTCTTCTTCCTTTCCTCGAGAAATGGTTCCCCCAACCAAATCCAAAACCACCCCAAAACCNTCCAAACCCAACGACATCCACCCCCTCACTCCCTCTCAAACCCACGAACATTCCTCCCTCTCTACCCCGCTTCGGAGACGGAGCCTCCGCCTCGCCTCCGTTCCTAACTCCGAACCTACCCAACCACCCGCCGCCACAACTCACNATTCCTCCCTTAGGGTTTCCACCGTGAGGAAAGGGAAGGGAAAGAAAACAAACCCAAACGGTTTGGAAGATGAAAGGGAAAGGAGTTTTCTGAACTTGCGATCAGGAAAAAAGGTTCTTAAGCAAGTAATAATGACCACCGGCGATGATGATTCTGGAAACAGTAGAAAAAGAAAAAACGAAGAAGAAGAAAATGAAGTGAACAATGATGAAGGAGGATCGAGTAGTACTCGAAGGAGAAAAGGCAAGGAAATAGCGGTTGATAATAACCGTTATGAAGAAAACGCAGCGNTTCGAGTTCGAGAACATTCTAGAAGAAGCTCCAACACGAGAGAACAAGGTTCGAGGAGGAACGAGTTCATNGAACGGTTCAGGAACATAGCAAGAGAGAATGCATCTCGTTTCGCTCTTTTTGCACAGCACGAAAACGAAAACGATAACGAAAACGATGAAGAACATTCACCATTTTCATCTCCTTCGCGAGAAGAAGAGAAGCATGAAATTGAAGACTGGCCTGGTCCTTTCTCAACCGCTATGAAAATCATAAGGGACAGAGAGAAGACCAAAGGNATTATCCAAACAGGTTCTGATTCTGCGTNTTCTTCGCAAAAAAGCTTATTCGATTCCATTGCGTGGGTTCCTAAACCGAGTGATTCGGGGAAACCGAGGTTTTCGGTGCCGTCGCTGCAAGAACTGTGTCTTCAGATTCTGGTTAAGAATGTCGATGCGATTGTTTCGCTCGAGAGTGTACCCGATTCACTGAGGCACAGGCTTAGCCAGTTGCTTTGTGACTCNAGAAGAATTAACGACCATTTCTTTGAACTCCTCGTTGGTGGTGCTCCCACGGAGGTTCGGCTTAGGGATTGCTCTTGGTTGACTGAGGAACAATTCACCAAGTGTTTTCAAGCGTGTGANACTTCCAATTTGGTGTCACCAAGGCAATTACCTAGATTAACNAGTCTATCCCTCAGTGGTGCATGCCGTCTCTCAGATGGAGGGTTGCGTGCACTTGTTTCTNCTGCTCCAGCACTTAGATCAATAAATCTCAGCCAGTGCTCCCTTCTCACTTCTGCTAGTCTTTATATTTTGGCTGAATCATTAAAATCTCTTCTTAAAGAGTTGTACCTTGATGATTGCCAAGGCATTGATGCTTCACTAATTGTGCCAGCACTGATGGAGCTTGAACATTTAGAGGTGTTGTCAGTGGNTGGCATTCAAACAGTCTGTGATGAATTTGTTAACGATTATATTGTTGCACGTGGTCACAACATGAAAGAGCTTATTCTGAAGAACTGTATTTACTTGACTGATGCATCAATCAAAGTCATTGCNGAACACTGTCCCAAATTATGTGTGCTTGATATAATGAACTTGTGCAAATTAACAGATTTGTCCATAGGATATCTTACAAACGGTTGTCAGGCACTTCATACACTGAAGCTTTCCCGTAATCCATTCAGTGATGAAGCAATTGCTGCATTTGTGGAGACTACTGGAGAGTCCTTGAAAGAACTTTCACTTAATAACATTAAGAAGGTTGGTTACCATACAACCGTATCACTTGCAAGCCATGCNAAAAGTTTGCATAGTCTAGACCTATCTTGGTGCCGAAATTTGACCAACAATGCGTTGGGTTTGATAGTAGATAGCTGCTTGTCGCTNAGGTTACTCAAACTTTTCGGATGCACTCAGGTAACAGATGCTTTTCTGAACGGCCACTCAAACCTACAGATCCAGATAATTGGTTCGAAGATGTCTCCTATTTTGCAACATGTCAGAGTGCCGGATCCTCATCAAGGGGCTTTGAATTATTCATCGGTCACCGTAGATTTGGCATAAATTAGAATCAGAAATCTTATATATAGTGGCATTGGCATAACAAAGATATTTCTAGTAGAGCCAGACCAGACGAAAACTTTCTACTAAAAAAAGGGCTGTTCAATCCATGTATTCAAATATGAACTCTGGTGCTGAGTTTTCATTTAATCGTCCTAGTTTTAATTGACCCAGGTTGTTACTTGTTACGATTAAATTGCTAACGGTCAAATTTTGAGTAAAATGTACGCAGAAGTTCAGATTATCATGCATGCTCAACTAATTANCCAAATTATTGGAATATCTCCCCCAANTTTGATCAATTGAATCTGGGATACAAACGATTTTGGGTCTTGCATTGTCATTTTTNATTTCCTGCGAGGGTCATATGACTGACGTATAGTGCTTTGCTTTTTTCCGGTCTCGAGTTTTTCTTCGCCTCGTGGTGATTTTTCATCCCTTGTTTGATATAATGGCATCCTCATCATTACACGTCATTCGGTCCAATGAAGATAACAGTGGAAGAGATGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00459	141496	148320	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000459s00027590.1	PF13516.1	LRR_6	376	398	0.43
Glyur000459s00027590.1	PF13516.1	LRR_6	534	555	0.34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.209
SRR1783600	control	6.145
SRR1783602	moderate drought stress	4.329
SRR1811619	moderate drought stress	4.222

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.023
DRR006520	Root Summer glycyrrhizin high producing strain	2.993
DRR006521	Root Winter glycyrrhizin high producing strain	2.918
DRR006522	Root Winter glycyrrhizin high producing strain	2.558
DRR006523	Root Summer glycyrrhizin low producing strain	2.385
DRR006524	Root Summer glycyrrhizin low producing strain	2.629
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.321
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.322

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.661
SRR2868004	Drought Stress (root)	2.234
SRR2967015	Control (root)	2.370

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.089
SRR9715740	Leaf	1.765
SRR9715741	Leaf	1.004
SRR9715739	Root	1.013
SRR9715742	Root	3.585
SRR9715743	Root	2.769

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.321
SRR8749028	MeJA induced 9h	6.618
SRR8749029	MeJA induced 9h	7.714
SRR8749030	Uninduced	0.205
SRR8749031	Uninduced	0.103
SRR8749032	Uninduced	0.145

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.937
SRR8400027	Control - Root	5.112