Gene detail information of Glyur000459s00027588 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20630.1 | 4.00E-70 | germin 3 |
| NR | XP_004513480.1 | 1.17E-130 | PREDICTED: auxin-binding protein ABP19a-like [Cicer arietinum] |
| COG | YP_005079325.1 | 2.00E-07 | Bicupin, oxalate decarboxylase/oxidase [Pseudovibrio sp. FO-BEG1] |
| Swissprot | tr|Q9ZRA4|AB19A_PRUPE | 3.00E-118 | Auxin-binding protein ABP19a (Precursor) |
| trEMBL | tr|D4NXQ4|D4NXQ4_ARAHY | 6.00E-127 | Germin-like protein subfamily 3 member 4 {ECO:0000313|EMBL:ADD71879.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00459 | 119487 | 120122 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000459s00027588.1 | PF00190.17 | Cupin_1 | 69 | 196 | 7.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.060 |
| SRR1811619 | moderate drought stress | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.149 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.526 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.502 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.174 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1610.208 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1592.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 637.351 |
| SRR9715740 | Leaf | 359.402 |
| SRR9715741 | Leaf | 250.645 |
| SRR9715739 | Root | 0.163 |
| SRR9715742 | Root | 0.097 |
| SRR9715743 | Root | 0.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.048 |
| SRR8400027 | Control - Root | 0.160 |