Gene detail

Gene detail information of Glyur000459s00027585.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13960.1	2.00E-46	growth-regulating factor 5
NR	XP_003534945.2	8.87E-165	PREDICTED: growth-regulating factor 1-like [Glycine max]
Swissprot	tr\|A2XA73\|GRF1_ORYSI	6.00E-59	Growth-regulating factor 1
trEMBL	tr\|I1L1P0\|I1L1P0_SOYBN	3.00E-165	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G07990.1}

Sequence

Transcript Sequence

>Glyur000459s00027585.1
ATGATGAACGGGAGGAACAGGTTCCCATTTACACCATCACAATGGCAAGAGCTTGAACACCAAGCTCTTATCTACAAGTACATGGCTTCAGGTATCTCCATCCCACCTGATCTTCTTTTCACNATCAAAAGGAGCTACTTGGATTCTCCTCTCTCTTCAAGGCTTTTGCCTAACCATCCACAACACATTGGATGGAACTATCTGCAAATGGGTTTGGGAAGGAAAATAGATCCTGAACCAGGTAGGTGTAGAAGAACTGATGGGAAAAAATGGAGGTGCTCAAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCATAGAGGGAAAAACCGTTCAAGAAAGCCNGTGGAAGTTTTGAAAACAACAACAACAAACACAAATAATAATGCTTCTTCANCAACAACACTCATCACTAAGAATGGCCCAGCAGCAGCATCACTACTATCCCCAACCACACATTCTCTTTCACCCTTTACATCTTCCTCTTCTTCTTTTTCCTCTGAGACACACCACCAACACCCTCAACAACACTCTTGCTATGGTTCCAACCTGCATCACCCTTTTCTCTACCATCACCAAACATCATCAAGGTCTTCTGGTATTGGTTTGTCNTTTGAAGACAATAGTGCTCCTCCCTTGAATAGGTATGTTTATGGACAGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACAGAGCCTTCTGGTGTTATGAAAAGCTTCTCTGGTTCCTCTATGGATGATTCATGGCAACTCACACCACTCACTATAAGCTCCTCATCTTCTTCTTCAAGACAGAGGAGTTGCTCTGGCAATGATTNCTCTTACTTGCAACTTCAGAGCCTCAGTGACCACTCAAAACAACAACAGCAAGATCAGGGTTGCTACATGTTAGGAGGTGAAAGAAAAGAAGAACCTCATCAGAAAACTGTTCATCACTTCCTTGATGAATGGCCCCACAAAGGTAGAAGGGACTCATGGCTTGATTTGGATGATAAATCATCCACTACCCAACTATCAATTTCCATTCCCACCTCTGCTCATGATTTNCCAACCTTCAATTCCAGAGCACATCATGGTAAAATTGAACTTCCCATAGAGATTAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00459	44299	45920	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000459s00027585.1	PF08880.6	QLQ	9	43	1.00E-15
Glyur000459s00027585.1	PF08879.5	WRC	77	120	3.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.732
SRR1783600	control	7.592
SRR1783602	moderate drought stress	6.248
SRR1811619	moderate drought stress	6.459

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.540
DRR006520	Root Summer glycyrrhizin high producing strain	3.544
DRR006521	Root Winter glycyrrhizin high producing strain	3.582
DRR006522	Root Winter glycyrrhizin high producing strain	3.449
DRR006523	Root Summer glycyrrhizin low producing strain	2.944
DRR006524	Root Summer glycyrrhizin low producing strain	3.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.498

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.490
SRR2868004	Drought Stress (root)	15.755
SRR2967015	Control (root)	18.249

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.996
SRR9715740	Leaf	1.071
SRR9715741	Leaf	3.303
SRR9715739	Root	0.498
SRR9715742	Root	0.916
SRR9715743	Root	0.838

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.359
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.234
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.229

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.774
SRR8400027	Control - Root	6.558