Gene detail information of Glyur000459s00027582.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35550.1 | 1.00E-51 | Duplicated homeodomain-like superfamily protein |
| NR | XP_003541301.1 | 4.99E-96 | PREDICTED: transcription factor MYB12-like [Glycine max] |
| Swissprot | tr|Q9FJA2|TT2_ARATH | 1.00E-62 | Transcription factor TT2 |
| trEMBL | tr|I1LY44|I1LY44_SOYBN | 2.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G16890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00459 | 6682 | 9148 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000459s00027582.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 1.10E-14 |
| Glyur000459s00027582.1 | PF00249.26 | Myb_DNA-binding | 67 | 111 | 2.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.983 |
| SRR1783600 | control | 1.036 |
| SRR1783602 | moderate drought stress | 6.527 |
| SRR1811619 | moderate drought stress | 6.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.231 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.010 |
| SRR2868004 | Drought Stress (root) | 0.037 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.105 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 1.521 |
| SRR9715739 | Root | 0.604 |
| SRR9715742 | Root | 2.725 |
| SRR9715743 | Root | 2.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.814 |
| SRR8400027 | Control - Root | 23.155 |