Gene detail information of Glyur000456s00017935 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24170.1 | 2.00E-49 | Got1/Sft2-like vescicle transport protein family |
| NR | XP_004498485.1 | 2.81E-97 | PREDICTED: vesicle transport protein SFT2B-like [Cicer arietinum] |
| trEMBL | tr|V7CXA0|V7CXA0_PHAVU | 2.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:ESW33536.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00456 | 138984 | 141109 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000456s00017935.1 | PF04178.7 | Got1 | 45 | 152 | 2.60E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.157 |
| SRR1783600 | control | 3.193 |
| SRR1783602 | moderate drought stress | 3.405 |
| SRR1811619 | moderate drought stress | 3.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.328 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.067 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.821 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.501 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.996 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.678 |
| SRR2868004 | Drought Stress (root) | 8.353 |
| SRR2967015 | Control (root) | 7.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.804 |
| SRR9715740 | Leaf | 5.968 |
| SRR9715741 | Leaf | 5.330 |
| SRR9715739 | Root | 1.942 |
| SRR9715742 | Root | 4.052 |
| SRR9715743 | Root | 3.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.325 |
| SRR8749028 | MeJA induced 9h | 2.439 |
| SRR8749029 | MeJA induced 9h | 2.263 |
| SRR8749030 | Uninduced | 3.384 |
| SRR8749031 | Uninduced | 1.467 |
| SRR8749032 | Uninduced | 1.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.992 |
| SRR8400027 | Control - Root | 10.511 |