Gene detail information of Glyur000456s00017930 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32720.1 | 4.00E-112 | La protein 1 |
| NR | XP_004498482.1 | 0 | PREDICTED: la-related protein 7-like [Cicer arietinum] |
| Swissprot | tr|Q93ZV7|LA1_ARATH | 8.00E-147 | La protein 1 |
| trEMBL | tr|A0A072VFS9|A0A072VFS9_MEDTR | 0 | RNA recognition motif protein {ECO:0000313|EMBL:KEH40298.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00456 | 109459 | 113854 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000456s00017930.1 | PF05383.12 | La | 14 | 44 | 4.10E-12 |
| Glyur000456s00017930.1 | PF14259.1 | RRM_6 | 142 | 194 | 1.50E-08 |
| Glyur000456s00017930.1 | PF08777.6 | RRM_3 | 337 | 430 | 1.20E-24 |
| Glyur000456s00017930.2 | PF05383.12 | La | 14 | 85 | 6.10E-23 |
| Glyur000456s00017930.2 | PF14259.1 | RRM_6 | 125 | 177 | 1.40E-08 |
| Glyur000456s00017930.2 | PF08777.6 | RRM_3 | 320 | 413 | 1.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.558 |
| SRR1783600 | control | 20.600 |
| SRR1783602 | moderate drought stress | 22.174 |
| SRR1811619 | moderate drought stress | 22.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.035 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.151 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.885 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.185 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.039 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.796 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.287 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.977 |
| SRR2868004 | Drought Stress (root) | 44.389 |
| SRR2967015 | Control (root) | 44.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.818 |
| SRR9715740 | Leaf | 30.277 |
| SRR9715741 | Leaf | 19.393 |
| SRR9715739 | Root | 3.891 |
| SRR9715742 | Root | 33.916 |
| SRR9715743 | Root | 22.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 109.958 |
| SRR8749028 | MeJA induced 9h | 48.362 |
| SRR8749029 | MeJA induced 9h | 68.624 |
| SRR8749030 | Uninduced | 6.279 |
| SRR8749031 | Uninduced | 2.190 |
| SRR8749032 | Uninduced | 7.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.901 |
| SRR8400027 | Control - Root | 47.525 |