Gene detail

Gene detail information of Glyur000456s00017925

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32760.1	1.00E-170	ENTH/VHS/GAT family protein
NR	XP_004498477.1	0	PREDICTED: TOM1-like protein 1-like [Cicer arietinum]
trEMBL	tr\|Q2V732\|Q2V732_SOYBN	0	VHS and GAT domain protein {ECO:0000313\|EMBL:ABB90835.1}

Sequence

Transcript Sequence

>Glyur000456s00017925.1
CGGAAGCACCAAACTATAGCTATCTTCGCTCGCGGAATAGACACAGGGAGGGACAGAGAAAGAGCGGAAAAAAAAAATCGCCGGAATCGTTCTCCGATCGCGCCGGTAGTTCGGTTTGTGGTCGTCGGAGAATAGCCGATCCCATCCCGTTTCGAAACGCCGGTGACCGGAGATGGTGAATTCCATGGTAGAACGCGCCACGAGCGACATGCTCATCGGTCCCGATTGGGCCATGAACATCGAGATCTGTGATATGCTCAATCATGACCCTGGGCAAGCAAAGGACGTTGTTAAAGGTATAAAGAAGCGCATTGGAAGTAAAAATTCAAAAGTTCAACTTCTTGCATTAACTTTGCTTGAGACAATCATAAAGAACTGTGGAGACATTGTTCACATGCATGTTGCAGAGAGAGACGTGCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTTTCATGTCAAAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCGAGGGCAAGATATCCACAATACTATGCTGCATACCAGGAACTATTGCGTGCTGGGGCAGTATTCCCTCAGAGATCTGAACAATCTGCACCNGTGTTCACACCTCCACAAACACAACCACTGGCGTCATACCCTCCAAATATGCGTGACATGGATGCTCGGCAGGACACAGCTGAGTCCTCTGCAGAGTCTGAGTTTCCAACGCTAAGTTTGTCTGAAATTCAAAATGCACGAGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGGTTAGACAAGAGGTTATTGTTGATTTAGTGGAGCAATGCCGAACATACAAGCAAAGAGTGGTACACCTTGTAAACTCAACTACGGATGAAGCACTGCTATGCCAAGGACTAGCTCTGAATGATGATCTACAGCGTGTACTGGCCAAGCATGAATCTATTTCTTCAGGAACTTCTACTCAAAATGAAAATCACANAGAGAATTCAAAACCTGCACCTGCTGGTGCACTTGTAGATATTGATGCTCCTTTGGTTGATACTGGAGATACTAGCAAACAAACTGATGGGAGAACCTCTTCTAGTGCTGAAGCAGGGTCCCAAACATTGAACCAGTTATTGCTTCCTGCGCCGCCTACATCTAACGGTTCAGCTGTCCCTGCCAAGGTTGATCCCAAGTTGGACTTGCTCAGTGGTGATGACTATAACTCACCTAAAGCAGATACTTCACTTGCTCTTGTTCCTATAGGAGAACAACATCCTGCCAGTCCCGTGTCTGACCAGAATGCCCTTGTTCTTTTTGATATGCTGTCCAGTGGAAACAATGCACCTACATCTGCCAATACCCAGCTATCCCAGCCAACTAATGTTGCTGGCCAAACCATTCCATCTACTCCCCAGTTTCAACAACAGCAGACTTTCATTTCTCAAGGTGNATTTTATCCCAATGGAAGTGTGCCAAATGCTGGTTCACCTCAGTATGAGCAATCACTGTATACACAAAGTACAGGTCCTGCCTGGAATGGTCAGGCTGCAGAACAGCAACAGCCGGCTTCTCCTGTTTATGGTGCACAAAATAGTGGATCATTACCGCCACCTCCCTGGGAAGCTCAACCGGCAGATAATGGCAGTCCAGTAGCAGGCACTCAGTATCCACAACCGCCGCAATTCACTCAAGTGGCTATGGCACATGTACACAGTGCTGCAAATTATCAGGGGCCTCAAGCAATGGGCAATGGCCAGGCTGTTGGTATGTATATGCAGCCAAATGCTAATGGCCATATGTCAGCAATCAATAACCATGTTGGGAGCAATCAATTGGGCATGCACCCTCAGCACATTCATGGTGTTGCAGGGCCCTACATGGGTATGGTTTCACATCAAACGCAAGCTGGTCCCATGGTTTCCATGTATCCTCAACAGATGTACGGAAACCAATATGTAGGATACGGCTATGGTCAACAACAAGGCGTTCCATACATGGAGCAGCAAATGTATGGTATGTCTATCAGAGATGATAGTGGTTTGCGAAACTCTAACCAGGTTTCGACTACATCTTATGTTCCATCTGGGAGACCTTCCAAGCCAGAGGATAAGTTATTTGGGGACCTTGTTGACATGGCAAAAGTGAAGCCAAAACCAACTCCAGGCCGAGCTGGTAGCATGTAAAAACGATGTCTTGGTTTTGCATTTCAGCCGTTTGCTAACTTGAGATGTTTCTATTTTTTATATATATAGTTTTTGTTACATATTGTTTACTTGTCTGGGAATTAGCATTTGATCATGTAAATTGGTTCTAGAGGAAACACTGAATTTTTATTTTCTATATTTTTTGGGGGGAGGGGGAGAAGAAAGAGAAAAGGGTAGACATACTCTGGGTTGGATTGTAGTTTGTGGCATTTCTCATGCTGTATTGCCCCTCCCTTTTCTAAGGGCAGTTCTTATGGTTAAAGGGTCATTTGAACTTAAACACCATCTTTNTTTTTTTTGGTACACCATCTTAAATTGTAGAGGAGGGGTGTCTTACCTTTGACGGTTATATCGAATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00456	79398	86544	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

cellular_component
GO:0005622 intracellular

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000456s00017925.1	PF00790.14	VHS	3	129	3.40E-32
Glyur000456s00017925.1	PF03127.9	GAT	186	274	1.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.846
SRR1783600	control	55.946
SRR1783602	moderate drought stress	119.196
SRR1811619	moderate drought stress	118.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	73.310
DRR006520	Root Summer glycyrrhizin high producing strain	72.970
DRR006521	Root Winter glycyrrhizin high producing strain	118.535
DRR006522	Root Winter glycyrrhizin high producing strain	115.915
DRR006523	Root Summer glycyrrhizin low producing strain	86.471
DRR006524	Root Summer glycyrrhizin low producing strain	86.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.858
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.638

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.182
SRR2868004	Drought Stress (root)	51.263
SRR2967015	Control (root)	60.796

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.375
SRR9715740	Leaf	27.067
SRR9715741	Leaf	28.821
SRR9715739	Root	38.313
SRR9715742	Root	48.409
SRR9715743	Root	43.396

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.690
SRR8749028	MeJA induced 9h	40.699
SRR8749029	MeJA induced 9h	28.433
SRR8749030	Uninduced	28.347
SRR8749031	Uninduced	29.804
SRR8749032	Uninduced	28.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.705
SRR8400027	Control - Root	45.466