Gene detail

Gene detail information of Glyur000456s00017924

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30380.1	3.00E-48	photosystem I subunit K
NR	KHN05287.1	4.29E-77	Photosystem I reaction center subunit psaK, chloroplastic [Glycine soja]
Swissprot	tr\|Q9SUI5\|PSAK_ARATH	2.00E-72	Photosystem I reaction center subunit psaK, chloroplastic (Precursor)
trEMBL	tr\|K7MCH3\|K7MCH3_SOYBN	2.00E-77	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G22780.2}

Sequence

Transcript Sequence

>Glyur000456s00017924.1
GAAGAATCAATATAGGATCAATATTAATTTCAAAGCTTTCATTGGAATTTACCAACAAANAGAGTTTGGAAAAACAAGTTGTCCAAAATCTGAAGAAAAAAAGAAAAGAAAGAAATGGGGCATCCTAAAGCCCCCGCACTCGTAATCCGAATTGAGATATCAAGCAACCTGGCAGCTAAGACATTATCCATTCCCCCAAAATAAAGCCAAATCAGATAATGCCACGTCGGAGTCACGTATCTAAGATTGGCGTTCTGAAGCCACAAATTGCTCATGTGGCTGCCATTAGATTCTGTTCCTTGTTACATCAGAAAATCATAGCANCCGCCTAGAGAAAGCAAGAACGAGAGATTCAACACTCTTCTGNATTTTCATTTCCTCTCTGAGCATTAACAAATGGCAACCACTGTGACGACCACTCTCCCTCAATTCAATGGTCTTAGACCCAACTTCTCAGCTTCCCCTGTCAAGAATTTGGTTCCTGTCCAATCCATGAGGCGCAAGGGGAAGGGTGCTTTGGGAGTTCGCTGTGACTTCATTGGTTCATCCACTAATGTGATTATGGTGGCTTCTACAAGCCTGATGCTGTTTGCTGGAAGGTTTGGATTGGCTCCCTCAGCAAACAGGAAAGCCACTGCAGGGCTAAAGCTTGAAGCTAGGGACTCAGGGTTGCAGACTGGTGATCCAGCTGGGTTTACCCTTGCTGATACTTTGGCCTGTGGAACTGTTGGCCACATCATTGGTGTTGGGGTTGTTCTTGGTCTTAAGAACATTGGTGCATTGTAAAAATAAAGGAACTATGTGATTGTGAACTACTTATGATGCATCTCTGTAATCAATTTTAATGTCCTTTTATTTATGCTTCTCTGAGACTGAACCATTTTTTTACCCTTTCTTCACCTTAATCTTTAGCTGCTCCTCTTCCAGCTGCTCCTCTTCCAACCTAGGCACACACAGACACAGATCTGTGATGACAGAGTAGTCAAATTGTCTCATTAAGCATTTCTGGTTTGGTAAATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00456	76921	78480	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009522 photosystem I

GO:0016020 membrane

molecular_function
GO:0016168 chlorophyll binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000456s00017924.1	PF01241.13	PSI_PSAK	50	129	2.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.060
SRR1811619	moderate drought stress	0.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.425
DRR006520	Root Summer glycyrrhizin high producing strain	0.416
DRR006521	Root Winter glycyrrhizin high producing strain	0.711
DRR006522	Root Winter glycyrrhizin high producing strain	0.713
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	329.606
DRR006526	Leaf Summer glycyrrhizin high producing strain	326.936

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.290
SRR2868004	Drought Stress (root)	26.958
SRR2967015	Control (root)	6.624

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	900.672
SRR9715740	Leaf	863.060
SRR9715741	Leaf	767.151
SRR9715739	Root	0.313
SRR9715742	Root	1.910
SRR9715743	Root	1.113

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.804
SRR8749028	MeJA induced 9h	2.647
SRR8749029	MeJA induced 9h	2.071
SRR8749030	Uninduced	3.707
SRR8749031	Uninduced	0.569
SRR8749032	Uninduced	7.379

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.445
SRR8400027	Control - Root	5.349