Gene detail

Gene detail information of Glyur000456s00017920

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11540.1	0	D-arabinono-1,4-lactone oxidase family protein
NR	XP_007161499.1	0	hypothetical protein PHAVU_001G074300g [Phaseolus vulgaris]
COG	YP_435799.1	1.00E-37	FAD/FMN-containing dehydrogenase [Hahella chejuensis KCTC 2396]
trEMBL	tr\|V7CVT8\|V7CVT8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33493.1}

Sequence

Transcript Sequence

>Glyur000456s00017920.1
CAATATTATCATTCATCTATCTATTTATCTGTCATAAAACTAAATCATAGCGTGTAGTTTTCCCTTAAATTNTTATCATCAACAAAAAAGGGTGCGCTTTCTGGCAGCTCACCTTCCACAATCAACGTCCCCGATTTATGCCGAGTCACTGACTCACGATTCCATTTCACGCGTTTGTAAAACACACACCACAAACATACTTTATCAATCAGCGTTCCCATCTGTTTTTCCGAGCATTAAACAGAAAAATAATTATAAAAAAAACAAGTAGGACCAAATCTTGATTTTCAATTCAAGAAATTCGGAGCATTTAATTAATTACTTGTATATTATTCCTTCTCTTTCTAGTCTCCCTTAGAAGCTTTGCCTTGCTTCTGCACCCATCCTCGCATTATAAGTTATAAACCAACACAAAATCCCCCAACAAACAAACTCAAGCACAAAAAAAACAAAAAGCCATATATATTTCAATTCACCACCACCATCATCCACATGGGTAGTGCCAGTGGCTATTGGATCATGTGGTGGCTTTTGGGCATCATTCACATTATAATCCAAACCACCCATGGCATGACCCCACAATCCCCAATCCAATGCAACCAAACAGGCTGCACCCTTCTCAACTCCTACGGCACATGGAATGACCGCAAGGAATGCCACGCTCTCAACGTGACATACCCAACAACCGAAGAACAGCTTCGTCTAGCAGTTTCCTACGCCGTTCAACACAACCTCAAAACCAAGGTTGTCACAAAATTCTCACANACCATTCCCAAACTCGCTTGCCCACAAGGAAATAACAGTGCTTTACTTATCAGCACAGAGAAGTATGACTCTGGGATCCAAATCGATGCGGCCAATATGGCTGTTACTGTTGATTCCGGTGTGGGGCTTCGTCAATTGATTGATGAGGTGGAACGAAGTGGGTTCAGCTTGGTGGCTGCACCTTATTGGGAAGGTGTCACTGTTGCGGGGCTTATTAGTACTGGGGCACACGGTAGCTCNTGGTGGGGGAAAGGTGGTGCTGTTCATGATCATGTTCTGGGTATTAGTATTGTTGTCCCTGCTTCCAAATCTGAAGGGTATGCCAAAGTTTTGAGGCTGGAAGCACGAGATCCTCTTCTTAATGCTGCCAAATTGTCGCTGGGAGTGTTGGGTGCCATCTCCAAGGTAAAGTTATCACTAGAGCATAGGTTCAAACGAAGCATAACCTACAATTTCACCGATGATGCTCATATTGAAGATGTGTACATGGAGCATGCAAAGCAGTATGAATTTGGAGACATAACCTGGTATCCATCAAAACACACAGCTGTGTACAGATACGATTCCAGGGTTCCCTTAAATGCCTCTGGNGATGGAGTCTATGATTTCATCGGATTTCAAGCCAATTCCATCTTGATCTCTGAGTCGGTTAGAGCAGCAGAGAAATTGCTGGAGAAGACAAAAAACGCAAATGGGAAATGCATAACGGCAGCTACTACTTTAGGATACAAGAAATTAGTAGCCAATGGGTTGAAGAACAATGGTCTGATCTTCACTGGGTACCCAGTAGTGGGTTACCAAGGCAAAATGCAAACCTCAGGTTCATGCCTACACTCATCAAGAATTGACACCGCATGTGCTTGGGATCCAAGAATCAAAGGCCTTTCCTTTTATGAGACAACAGCAATCTTCCCAGCTTCCAAATTCGGAGACTTCATCCGTGATGCGAGGAAACTGAGAGACCAAAATCCCGAGAATTTCTGTGGGATAGACAACTACAATGGTATCCTGATCCGATTCATCAAAGCCTCAGATGCATACCTAGGACAATCTGAAGACTCTNTAGTGATTGATTTCAACTACTATCGTGCAAATGACCCATTAGCTCCAAGGCTAAACCAAGATGTGTGGGAGGAATTGGAGCAAATGGCATTCTTCAAGTATGGGGCTAAACCACATTGGGCTAAAAACAGGAACTTGGCATTCCTAGGTGTGCAGCAAAAGTACCCAAAATTTAACCAGTTTATTGAAGCCAAAAAACAAATGGATCCACAGAATGTGTTCTCTGGTGAATGGACAGAGGAGATCCTGTATGGGAAGGTATCAGAAAATAATAAAGCTGATGGGTGTGCTTTGGAAGGACAATGCATATGTTCTGAAGACAGACATTGTAGCCCACAATTGGGGTATTATTGTAGCCATGGCCTTATCTACAAGGAAGCTAGAGTTTGTAGGTATTTAACGTCAATACCAATCTCCATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00456	52654	58311	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0003885 D-arabinono-1,4-lactone oxidase activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000456s00017920.1	PF01565.18	FAD_binding_4	59	191	2.90E-14
Glyur000456s00017920.1	PF04030.9	ALO	388	526	2.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.906
SRR1783600	control	5.815
SRR1783602	moderate drought stress	3.259
SRR1811619	moderate drought stress	3.247

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.083
DRR006520	Root Summer glycyrrhizin high producing strain	12.927
DRR006521	Root Winter glycyrrhizin high producing strain	6.752
DRR006522	Root Winter glycyrrhizin high producing strain	6.585
DRR006523	Root Summer glycyrrhizin low producing strain	17.658
DRR006524	Root Summer glycyrrhizin low producing strain	17.428
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.294
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.192

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.179
SRR2868004	Drought Stress (root)	12.647
SRR2967015	Control (root)	10.529

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.806
SRR9715740	Leaf	0.666
SRR9715741	Leaf	1.312
SRR9715739	Root	1.402
SRR9715742	Root	8.155
SRR9715743	Root	6.881

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.170
SRR8749028	MeJA induced 9h	0.546
SRR8749029	MeJA induced 9h	1.847
SRR8749030	Uninduced	0.319
SRR8749031	Uninduced	0.018
SRR8749032	Uninduced	0.422

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.161
SRR8400027	Control - Root	8.582