Gene detail information of Glyur000456s00017914 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25810.1 | 2.00E-63 | tonoplast intrinsic protein 4;1 |
| NR | XP_003588369.1 | 2.18E-109 | Aquaporin TIP4-1 [Medicago truncatula] |
| COG | YP_007795.1 | 3.00E-20 | tonoplast intrinsic protein (Aquaporin) [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|O82316|TIP41_ARATH | 2.00E-77 | Aquaporin TIP4-1, N-terminally processed |
| trEMBL | tr|G7IB33|G7IB33_MEDTR | 1.00E-107 | Major intrinsic protein (MIP) family transporter {ECO:0000313|EMBL:AES58620.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00456 | 27159 | 28916 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000456s00017914.1 | PF00230.15 | MIP | 89 | 213 | 1.90E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.167 |
| SRR1783600 | control | 40.791 |
| SRR1783602 | moderate drought stress | 16.438 |
| SRR1811619 | moderate drought stress | 16.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.601 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.683 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.135 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.795 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.491 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 97.281 |
| SRR2868004 | Drought Stress (root) | 80.206 |
| SRR2967015 | Control (root) | 78.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.886 |
| SRR9715740 | Leaf | 32.560 |
| SRR9715741 | Leaf | 11.605 |
| SRR9715739 | Root | 125.656 |
| SRR9715742 | Root | 115.546 |
| SRR9715743 | Root | 123.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.327 |
| SRR8749028 | MeJA induced 9h | 0.820 |
| SRR8749029 | MeJA induced 9h | 0.757 |
| SRR8749030 | Uninduced | 0.134 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 136.475 |
| SRR8400027 | Control - Root | 136.030 |