Gene detail information of Glyur000456s00017912.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25820.1 | 6.00E-180 | Exostosin family protein |
| NR | XP_004498468.1 | 0 | PREDICTED: probable glycosyltransferase At5g03795-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FFN2|GLYT3_ARATH | 2.00E-101 | Probable glycosyltransferase At5g03795 |
| trEMBL | tr|I1MWC3|I1MWC3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G27550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00456 | 20673 | 23841 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000456s00017912.1 | PF03016.10 | Exostosin | 329 | 605 | 1.80E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.703 |
| SRR1783600 | control | 7.637 |
| SRR1783602 | moderate drought stress | 5.267 |
| SRR1811619 | moderate drought stress | 5.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.146 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.628 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.336 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.052 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.277 |
| SRR2868004 | Drought Stress (root) | 5.449 |
| SRR2967015 | Control (root) | 4.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.664 |
| SRR9715740 | Leaf | 1.107 |
| SRR9715741 | Leaf | 1.514 |
| SRR9715739 | Root | 0.945 |
| SRR9715742 | Root | 3.521 |
| SRR9715743 | Root | 2.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.982 |
| SRR8749028 | MeJA induced 9h | 13.082 |
| SRR8749029 | MeJA induced 9h | 15.978 |
| SRR8749030 | Uninduced | 8.982 |
| SRR8749031 | Uninduced | 18.415 |
| SRR8749032 | Uninduced | 13.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.441 |
| SRR8400027 | Control - Root | 9.616 |