Gene detail information of Glyur000456s00017907 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11590.1 | 1.00E-45 | Integrase-type DNA-binding superfamily protein |
| NR | NP_001237808.1 | 9.52E-69 | TINY [Glycine max] |
| Swissprot | tr|Q9LYD3|DREB3_ARATH | 6.00E-59 | Dehydration-responsive element-binding protein 3 |
| trEMBL | tr|I1MA08|I1MA08_SOYBN | 8.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G22740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00456 | 6241 | 7029 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000456s00017907.1 | PF00847.15 | AP2 | 62 | 112 | 6.80E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.035 |
| SRR1783600 | control | 10.669 |
| SRR1783602 | moderate drought stress | 17.231 |
| SRR1811619 | moderate drought stress | 17.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.349 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.366 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 103.049 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 101.543 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.153 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.624 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.174 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.314 |
| SRR2868004 | Drought Stress (root) | 11.728 |
| SRR2967015 | Control (root) | 17.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.857 |
| SRR9715740 | Leaf | 0.561 |
| SRR9715741 | Leaf | 0.811 |
| SRR9715739 | Root | 88.942 |
| SRR9715742 | Root | 29.983 |
| SRR9715743 | Root | 35.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.599 |
| SRR8749028 | MeJA induced 9h | 27.712 |
| SRR8749029 | MeJA induced 9h | 60.031 |
| SRR8749030 | Uninduced | 5.872 |
| SRR8749031 | Uninduced | 5.784 |
| SRR8749032 | Uninduced | 14.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.846 |
| SRR8400027 | Control - Root | 20.872 |