Gene detail information of Glyur000455s00015992 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54020.1 | 4.00E-135 | Arabidopsis Inositol phosphorylceramide synthase 1 |
| NR | KEH23060.1 | 0 | plant inositol phosphorylceramide synthase [Medicago truncatula] |
| Swissprot | tr|Q9M325|IPCS1_ARATH | 1.00E-169 | Phosphatidylinositol:ceramide inositolphosphotransferase 1 |
| trEMBL | tr|A0A072UB40|A0A072UB40_MEDTR | 0 | Plant inositol phosphorylceramide synthase {ECO:0000313|EMBL:KEH23060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00455 | 130272 | 134488 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000455s00015992.1 | PF14360.1 | PAP2_C | 172 | 240 | 6.90E-23 |
| Glyur000455s00015992.2 | PF14360.1 | PAP2_C | 172 | 198 | 1.60E-06 |
| Glyur000455s00015992.3 | PF14360.1 | PAP2_C | 4 | 46 | 6.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.733 |
| SRR1783600 | control | 6.792 |
| SRR1783602 | moderate drought stress | 7.841 |
| SRR1811619 | moderate drought stress | 7.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.634 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.781 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.488 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 115.729 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 115.881 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.644 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.150 |
| SRR2868004 | Drought Stress (root) | 76.085 |
| SRR2967015 | Control (root) | 46.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 183.711 |
| SRR9715740 | Leaf | 113.125 |
| SRR9715741 | Leaf | 266.642 |
| SRR9715739 | Root | 40.432 |
| SRR9715742 | Root | 89.482 |
| SRR9715743 | Root | 76.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 181.363 |
| SRR8749028 | MeJA induced 9h | 242.039 |
| SRR8749029 | MeJA induced 9h | 399.286 |
| SRR8749030 | Uninduced | 155.247 |
| SRR8749031 | Uninduced | 329.763 |
| SRR8749032 | Uninduced | 312.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.097 |
| SRR8400027 | Control - Root | 64.783 |