Gene detail information of Glyur000455s00015986 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01360.1 | 2.00E-147 | Plant protein of unknown function (DUF828) |
| NR | XP_006583661.1 | 0 | PREDICTED: protein YLS7 isoform X2 [Glycine max] |
| Swissprot | tr|Q8LED3|TBL3_ARATH | 0 | Protein trichome birefringence-like 3 |
| trEMBL | tr|I1JLD0|I1JLD0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G07520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00455 | 81719 | 84745 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000455s00015986.1 | PF14416.1 | PMR5N | 85 | 139 | 3.50E-21 |
| Glyur000455s00015986.1 | PF13839.1 | PC-Esterase | 140 | 171 | 1.20E-07 |
| Glyur000455s00015986.1 | PF13839.1 | PC-Esterase | 172 | 400 | 4.70E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.617 |
| SRR1783600 | control | 5.709 |
| SRR1783602 | moderate drought stress | 1.364 |
| SRR1811619 | moderate drought stress | 1.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.249 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.401 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.908 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.209 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.465 |
| SRR2868004 | Drought Stress (root) | 12.343 |
| SRR2967015 | Control (root) | 13.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.970 |
| SRR9715740 | Leaf | 2.055 |
| SRR9715741 | Leaf | 0.914 |
| SRR9715739 | Root | 0.901 |
| SRR9715742 | Root | 4.984 |
| SRR9715743 | Root | 4.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.688 |
| SRR8400027 | Control - Root | 31.395 |