Gene detail

Gene detail information of Glyur000455s00015979

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G05570.2	transducin family protein / WD-40 repeat family protein
NR	KEH23187.1	nucleotide-binding protein [Medicago truncatula]
trEMBL	tr\|A0A072U0I8\|A0A072U0I8_MEDTR	Nucleotide-binding protein {ECO:0000313\|EMBL:KEH23187.1}

Sequence

Transcript Sequence

>Glyur000455s00015979.1
GTTGATCTTTTCCATTCAAAAAATTGAAAATATTAGGCATTGGAATGACCAGCCAGACAAAGCAAACCAAATTCTGAAAGACCTTCATTCCCCGACGCCAACAACATCGTCAGCAACCATGTTTGCCAAGAGGTTGTTGCACAAGGCTGTGCAGCACCATTCCAACTACAAGTTGCAGCATGGTAGTTTGCAGCCAAGTGATTTGGATCCCAGAATTGTCATTCACTATGGCATTCCATCTACTGCTTCTGTTCTCGCCTTTGACCCCATTCAGCGACTTTTGGCGATTGGGACACTGGATGGAAGACTTAAGGTGATTGGTGGTGATAATATTGAAGGACTTTTGGTTTCTCCTAAGCAATTGCCTTACAAATACTTGGAGTTCCTACAAAACCAGGGGCATTTAGTTGGTGTCTTAAATGATAATGACATCCAGGTCTGGAATCTTGAGAATCGGAGCCTTATTTGTTCTTTACAATGGGAGTCCAATATTACTGCTTTCTCTGTAATCAGTGGCTCACATTTCATTTATGTTGGAGATGAGCATGGNTTGTTATCTGTGATAAAGTTTGAAGATGAGGACAGACAACTTTTGAACTCATCATATCATTTGTCTGCAAAATTTCTAAGGGAAGCTGCCGGATTGTTGATTGCATTTGAGGATGGGCTGCTAGTTCTTTGGGATGTTTCTGAAGCTAAAATCGTGTTCGTTGGTGGTGGAAAGGATCTCCAATTGAAGGATGGGGGTGGTAACCCTACCGAAATGGACCCCAATCTTCCAGCTGATATTTTAGAACAAAATCTGGGAGACAAAGAGATAAGTGCTCTTTGCTGGGCATCTTCCACTGGGTCCATTCTTGCTGTGGGATACTTAGATGGAGATATCCTTTTCTGGAACTTGTCATCTGCAGCACCTTCTAAAGGTCAACNAAGTTCTTCATCTAAAAATGTTGTTAAGCTACAACTGTCCTCTGCAGAAAGAAGAATCCCGGTCATTGTCTTACAATGGTCCAACANTCATAAATCTCATAACGATTGTGCGGGGCAGTTGTTTGTCTATGGTGGTGATGAAATCGGATCTGAAGAAGTTTTGACTGTTTTAACTCTTGAATGGTCATCTGGGATGGAGTCAGTAAGATGCACTAGTCGTGCGGACCTTACGCTTAATGGCTCTTTTGCAGACTTGATTTTACTGCCAGGTCCTGGAGCAATGGGGTTGAATAGCAAAGATGATCTTTTTGTACTGACAAACCCAGGACAACTACACTATTATGATAATGATAGCTTGTCTGCATTAACGTCTCAGCAGAATAGGACACCATCTGTATGTGCACAGGAGTTTCCAGTGCTNATACCTATGGCTGATCCATCTTTGACTGTTGCAAAACTTATCAAGTTGCCCAGTGAGTTAAATTCGTCAAAAGTTCTAGCTGAGGTAGCCTCGGTTCTGAGAACTGGTTCAACACCTGGTTCAGCTATTTGTTCAAATTGGCCCTTGACTGGGGGTGTTCCCAGCCACTTGTCCACTGCTAAAGGTGCTGAAGTTGAGAGAATTTATTTTGTGGGTTATTCTAATGGATCTGTCCTTGTGAACGACGTAAAAATGACTGGTTCAAGTGCTCAAGTGACAAAATTGGACTTTTGTTCTGTTTCCTTACTTTTGGCCGTGGGCAGTGAATGTGGTCTTGTTCGCGTTTATGACCTTAAAGATCACTCTGGTGGGAAAAAATTCCATTTTGTCACAGAAACAAAAAGCAAAGTCCATGACTCTCCACAAGGAAAAGGACCTCATTGTAGTGCTGTTTTTTCTCTTCTTGGTTCTCCAGTACAAGCATTATCTTTNGCAAATTCTGGAACCAAACTTGCTGTTGGATTTTTAAGTGGCCGTGTTGCAGTCTGTGATATGACATCATTGTCNGTTTTGTTCTTGATTGATGGTGTACCTAGCTCTACCTCACCAATTACTNCAATGGTTTGGAAACAACAAGCATGTTTCCAAAGTGCTCTGAATAGTCCAAAGCAACCAGAAACACCTTCAGGCAACTCTCTTGAAGAGATACTATTTGTCTTATCCCAGGATGGAAAAATTAATGTAGTTGAGGGTGATACTGGTAAAATGATCTCAAGTCGACCAATACATGTGAAGGAATCAACTGCAATTTCAATGTATGGATTTTTTGAACCCCCAGAGGATAGCATCTCAATCTCTGAAGCATCGAATGACAAGCAGCAGGAGGAACCNTTGAAGGGTACTGCTGGTGCTCACCCTGAAGAGCCTGTGCAAGAAAGTAACTCAACTGGGGTAAATTCATCACAGGCTGAACTTTCCTCTTCAGAAACCACATCTTCTGGAGATTTCCTTTTGGATCCACTTGTTCTGCTCTGCTGTGAAAATTCATTGCGCTTGTTGTCTTCAAAATCATTGATACAGGGAAGTAAGAAACCGATTCGAAAAGTGAAACATTCTAAATCTTGCTATTGGACTGCAATTTTGGAGAAAGACAACAAGTTCTGTGGGCTTCTATCATTGCTTCAGACTGGAACATTTGAAATAAGGTCTTTACCAGATTTGGAATTGGTGGCAGAAAGCTCTTTATTGTCAATTTTAAGGTGGAATTATAAAGTGAACATGGATAAAACCATGTGTTCCGATGATAACGGACAGATTGTGCTGGCTAATGGTTCTGAATTGGCATTCATCTCCTTACTAGCTGGNGAAAAGGGATTCAGGAATCTGGAGCATTTGCCTTGTCTTCACGATAAAGTTCTTGCAGCTGCTGCCGATGCTGCGTTTAGCTTCTCTTCAAATCAGAAGAAAAAACAGACCACTGTACCGGCGATTCTAGGTGGTATTGTTAAAGGATTTAAAGGAGGAAAAACCTCTCCAGCAGGTTTGACTAAAATTCCAACCTCCAATTTCGGTCATTTGGAAGACATTTTCTTTAAGCCCTCCTTGCCGGATTCCCTTCCAACAGTGGCAATCNCCGATGATAAAGAATTGGAGCTTGATATAGATGACATTGAAATAGACGATGAGCCTGTAACTAAGGCTTCTACTTCATCTCCTGATGTAAAAAACAAACAGAAAGATAAGCTACAAGAAAGGGAGAAATTATTTGAAGGTGGGACTAATGATGATGTAAAGCCAAGACTCAGAACACCTGAAGAAATTATGGCTACTTATAGAAAAACTGGGGATGCTTCTTCGGTTGCTGCCCAAGCAAGAAACAAGCTTATGGAGAGGCAGGAAAAATTGGAGAGAATCAGCCAACGTACTGAAGAACTGCAAAATGGAGCTGAAGATTTTGCATCATTAGCAAATGAGCTTGTCAAGACCATGGAAAGGAGGAAATGGTGGCAAATATAGACACACACCAAATATAAAAAGATGGTTTGCCCGTATGAATTGTTTGTATTTATTGTCTTGTATATTATATTACATATTTGTGGCTGTTGGCTTTGTTTTTGTTTCATTTGTTGCATAGAACTATAAAAAGAAATTACAGAAGAATGGTACAATTTGCTGATATAAGATGCAAGCCTAGTAGTAACACATGTAGTGTGTTTAGAAA

Protein Sequence

>Glyur000455s00015979.1
MFAKRLLHKAVQHHSNYKLQHGSLQPSDLDPRIVIHYGIPSTASVLAFDPIQRLLAIGTLDGRLKVIGGDNIEGLLVSPKQLPYKYLEFLQNQGHLVGVLNDNDIQVWNLENRSLICSLQWESNITAFSVISGSHFIYVGDEHGLLSVIKFEDEDRQLLNSSYHLSAKFLREAAGLLIAFEDGLLVLWDVSEAKIVFVGGGKDLQLKDGGGNPTEMDPNLPADILEQNLGDKEISALCWASSTGSILAVGYLDGDILFWNLSSAAPSKGQXSSSSKNVVKLQLSSAERRIPVIVLQWSNXHKSHNDCAGQLFVYGGDEIGSEEVLTVLTLEWSSGMESVRCTSRADLTLNGSFADLILLPGPGAMGLNSKDDLFVLTNPGQLHYYDNDSLSALTSQQNRTPSVCAQEFPVLIPMADPSLTVAKLIKLPSELNSSKVLAEVASVLRTGSTPGSAICSNWPLTGGVPSHLSTAKGAEVERIYFVGYSNGSVLVNDVKMTGSSAQVTKLDFCSVSLLLAVGSECGLVRVYDLKDHSGGKKFHFVTETKSKVHDSPQGKGPHCSAVFSLLGSPVQALSXANSGTKLAVGFLSGRVAVCDMTSLSVLFLIDGVPSSTSPITXMVWKQQACFQSALNSPKQPETPSGNSLEEILFVLSQDGKINVVEGDTGKMISSRPIHVKESTAISMYGFFEPPEDSISISEASNDKQQEEPLKGTAGAHPEEPVQESNSTGVNSSQAELSSSETTSSGDFLLDPLVLLCCENSLRLLSSKSLIQGSKKPIRKVKHSKSCYWTAILEKDNKFCGLLSLLQTGTFEIRSLPDLELVAESSLLSILRWNYKVNMDKTMCSDDNGQIVLANGSELAFISLLAGEKGFRNLEHLPCLHDKVLAAAADAAFSFSSNQKKKQTTVPAILGGIVKGFKGGKTSPAGLTKIPTSNFGHLEDIFFKPSLPDSLPTVAIXDDKELELDIDDIEIDDEPVTKASTSSPDVKNKQKDKLQEREKLFEGGTNDDVKPRLRTPEEIMATYRKTGDASSVAAQARNKLMERQEKLERISQRTEELQNGAEDFASLANELVKTMERRKWWQI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00455	38430	48645	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016192 vesicle-mediated transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000455s00015979.1	PF00957.16	Synaptobrevin	1031	1077	1.80E-06
Glyur000455s00015979.2	PF00957.16	Synaptobrevin	1024	1070	1.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.716
SRR1783600	control	4.738
SRR1783602	moderate drought stress	6.463
SRR1811619	moderate drought stress	6.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.275
DRR006520	Root Summer glycyrrhizin high producing strain	6.201
DRR006521	Root Winter glycyrrhizin high producing strain	16.710
DRR006522	Root Winter glycyrrhizin high producing strain	16.560
DRR006523	Root Summer glycyrrhizin low producing strain	8.620
DRR006524	Root Summer glycyrrhizin low producing strain	8.721
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.361
SRR2868004	Drought Stress (root)	30.516
SRR2967015	Control (root)	31.213

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.059
SRR9715740	Leaf	17.940
SRR9715741	Leaf	21.602
SRR9715739	Root	1.398
SRR9715742	Root	8.928
SRR9715743	Root	8.646

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.938
SRR8749028	MeJA induced 9h	15.587
SRR8749029	MeJA induced 9h	8.050
SRR8749030	Uninduced	26.145
SRR8749031	Uninduced	23.541
SRR8749032	Uninduced	12.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.509
SRR8400027	Control - Root	16.685