Gene detail

Gene detail information of Glyur000455s00015977

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05580.1	1.00E-163	fatty acid desaturase 8
NR	XP_007140271.1	0	hypothetical protein PHAVU_008G098100g [Phaseolus vulgaris]
COG	YP_007092097.1	8.00E-102	Delta-15 acyl-phospholipid desaturase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|P48621\|FAD3C_SOYBN	0	Omega-3 fatty acid desaturase, chloroplastic (Precursor)
trEMBL	tr\|V7B3Y0\|V7B3Y0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12265.1}

Sequence

Transcript Sequence

>Glyur000455s00015977.1
GTCAAATACACGGCAAGAATAAGAGTAAAATCCTAGTCATTACATGAGAATCATCATCATAGTAAAAGTAAACACGGATTGGTTATTTGGTTTGGTCATTGGTGTCTCTTCCTTACACACAATCTAAACAGCATGATCAAATTTGCACCGGCACGCACAATTCACGAACCCCTTCCTTCACCACCTATATATTCCATTTCCAACAAGTCGCAAAAGCCATAACTGAGAAACCAAATAGACCCTTCTCTTCCTTCTCTCTGAAAGCCAAGATTTTTATCATCAACCTGAGAGAAAAGAAACATAAAGGGTTAAAAATTCTGTGTGGTTGATTGTTATTGGAAGTTGAAGCACAGATTACCCAACCAAGTGTTCAATTTCCCAAACAAATTTGTTATTTTTCAATTTCAATATTATAGGACCNATTTCATAAGTATTTAGGCCTAGATATTTTGCTTCTGGTTCCAATCCTTTTGCATTCTTCTCTGCTTCTCCTATCATTTTGTTAATTTTCCTTAACCTAACCATCCAACCAACACACCCCTGGTCTTCTATGGCAACTTGGGTTTTATCAGAATGTGGCTTAAAGCCTCTTGCCCCAGTATTCCCCAGACCCAGAAATGGGGTTGTTCTGCCCACCCCTTCTACAAAGGTTAGATTTTTGGGCACAAACAAGGTAGTGGCAGATCTGAAGTTTCAACCCAGAAGAAGCATTCTTCCAAGTTGTAATAATTTCAGGGAGAGAAGAAACTGGGGGTTGAAAGTGAGTGCCCCTTTAAGGGTTGACTCATCAGAGGACACAGGTATAAATATCAATGGGGCTAATAGTGTTGTTGAAGAGGAGGAACTCCCAGAGTTTAACCCAGGTGCACCACCACCATTCACATTGGCTGATATAAGAGCAGCCATTCCAAAACATTGTTGGGTGAAGAACCCTTGGAAGTCTATGAGCTATGTTGTGAGGGATATTGTTGTTGTTTTTGGGTTGGCTGCTGCTGCTGCTTATCTCAATAACTGGATGGTTTGGCCTCTCTATTGGGCTGCTCAAGGAACCATGTTTTGGGCTCTGTTTGTTCTTGGCCATGATTGTGGTCATGGAAGCTTTTCAAATGACCCCAAGTTGAACAGTGTTGTTGGGCATCTCTTGCATTCTTCCATTCTAGTTCCCTATCATGGATGGAGAATCAGCCATAGGACTCATCACCAAAATCATGGCCATGTTGAAAATGATGAATCTTGGCACCCGTTGCCAGAAAGATTATTCAGGAGCTTGGACAGTGTGACACGTACTTTAAGATTCACAGCCCCTTTTCCATTGCTTGCTTATCCTGTCTACCTTTGGAGCAGGAGTCCTGGGAAGACTGGTTCTCACTTTCATCCAAGCAGTGACTTGTTTGTTCCCAATGAGAAAAAAGATGTTATTACTTCTACAGTTTGTTGGGCTGCTATGGTGGCTGTGCTTGTAGGATTGGGGTTTGTGATGGGTCCAATTCAATTACTTAAGCTTTATGGAGTTCCCTATGTTCTTTTTGTGATGTGGTTGGATTTGGTCACTTACTTGCACCATCATGGCCATGAAGACAAATTACCCTGGTATCGTGGAAAGGAATGGAGCTACCTTAGGGGTGGTCTTACTACTCTTGATCCTAAGCCAGTGTTTGGAAAATATTACAGAGAGCCAAAGAAATCTGCTCCTCTTCCTTTTCACCTTATTGGGGAACTCATAAGGAGCTTAAAGAGAGACCATTTTGTTAGTGACACTGGGGATATTGTGTACTATCAATCAGACCCTGAGATTAGTGCCTCTTCTTCTAAATCAGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00455	27987	30999	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000455s00015977.1	PF11960.3	DUF3474	1	147	1.30E-52
Glyur000455s00015977.1	PF00487.19	FA_desaturase	154	353	3.20E-24
Glyur000455s00015977.2	PF11960.3	DUF3474	1	147	1.10E-52
Glyur000455s00015977.2	PF00487.19	FA_desaturase	154	328	3.70E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.352
SRR1783600	control	0.390
SRR1783602	moderate drought stress	0.147
SRR1811619	moderate drought stress	0.182

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.454
DRR006520	Root Summer glycyrrhizin high producing strain	12.837
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	12.331
DRR006524	Root Summer glycyrrhizin low producing strain	12.578
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.674
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.840

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.741
SRR2868004	Drought Stress (root)	55.601
SRR2967015	Control (root)	27.696

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	134.224
SRR9715740	Leaf	46.396
SRR9715741	Leaf	127.630
SRR9715739	Root	20.233
SRR9715742	Root	99.017
SRR9715743	Root	87.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.337
SRR8749028	MeJA induced 9h	12.070
SRR8749029	MeJA induced 9h	13.159
SRR8749030	Uninduced	61.527
SRR8749031	Uninduced	34.729
SRR8749032	Uninduced	32.901

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.779
SRR8400027	Control - Root	36.430