Gene detail

Gene detail information of Glyur000454s00019927

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61440.1	1.00E-165	cysteine synthase C1
NR	XP_003623996.1	0	Cysteine synthase [Medicago truncatula]
COG	YP_591171.1	4.00E-116	cysteine synthase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q1KLZ2\|CAS1_MALDO	0	L-3-cyanoalanine synthase 1, mitochondrial (Precursor)
trEMBL	tr\|G7L5N4\|G7L5N4_MEDTR	0	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}

Sequence

Transcript Sequence

>Glyur000454s00019927.1
CTTGCATATAGCAGCCATTAGTCTATACTTTAATACTCTATATAAGTCGGAAATAGCAGGGGTCTGTTCTGGTGTACTGGGAAATAATAGCAGAGCATTTTGAGATCCTTCAATATTAATCAGTTCAATGGCTTCCCTCAGGAGCTTCCTCCTCAAGCGAAGTTCTTCTTCTTCTTCTTCTTCCTATGCTGCTGCCGTGGCAGCATGCCATTGCCACCACCCCATGATGAAGAGATTGTTCTCAACAGCTACCAACATTGATTCCCCTTCTTTTGCTCAGAGAATTAGAGATTTGCCAAAAGATCTTCCTGGTACCAACATCAAAAAACATGTTTCCCAGCTCATTGGGAGGACTCCACTGGTTTATCTCAACAAAGTCACTGAAGGATGTGGAGCTTATATTGCTGTCAAGCAAGAGATGATGCAGCCTACTGCCAGCATCAAAGACAGACCNGCACTTGCAATGATCGAGGATGCTGAGAAAAAGAATCTGATATTTCCTGGAAAGACAATTCTGATAGAGCCCACATCAGGGAATATGGGTATCAGCATGGCCTTTATTGCTGCCATGAAGGGATATAAGATGGTTTTGACCATGCCCTCTTACACAAGCTTGGAAAGAAGGGTGACCATGAGAGCATTTGGAGCTGAATTGATCCTCACTGATCCAACCAAAGGAATGGGAGGAACAGTTAAGAAGGCTTATGACCTTCTTGAATCCACACCAAATGCTTTCATGCTGCAACAGTTTTCCAACCCAGCCAATACTCAGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTGATGGGGATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAATATCTTAAATCCCAAAACCCCAATGTTAAGATATATGGAGTGGAGCCGGCTGAAAGTAATGTGCTNAATGGTGGTAAACCAGGCCCTCATCAAATAACTGGCAATGGGGTTGGATTCAAACCAGACATATTGGACATGGAAGTAATGGAAAAAGTTCTTGAAGTTAGCAGTGAGGATGCAGTTAACATGGCAAGGACATTGGCCTTGAAGGAAGGACTCATGGTAGGTATATCATCCGGAGCTAACACAGTTGCGGCACTCAAACTGGCTAGTCTACCTGAGAACAAAGGCAAACTTATTGTGACTGTTCATCCAAGTTTCGGGGAACGATACCTGTCATCTGTCCTGTTCCAAGAGCTTCGGAAAGAGGCNGAAAACATGCAGCCAGTGTCAGTTGATTAACGTCTTCCATGAGTTCTGCAACACAACTAGAAAGCTTTGTTGTGGAGTTGGCATGGATCAACTTGGTTGTTGATATTGTAGCAAAAAAAAGTAGTCAACTTCAGCTTACAATTCTGCCATAGCAAAAATCTTGTCTTAATGCTTTGTAATGCTTTGCTTTGTTTTGTTTAGTTTTTTATTGGAAAAAAAAGTATGTGGATTTGAAGTGACCGAAATATCTTCTAAAATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00454	157393	160709	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13034	ATCYSC1	EC:2.5.1.47 4.4.1.9	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270
			Cyanoamino acid metabolism	map00460

Gene Ontology

biological_process
GO:0006535 cysteine biosynthetic process from serine

molecular_function
GO:0004124 cysteine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000454s00019927.1	PF00291.20	PALP	69	356	1.90E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.196
SRR1783600	control	10.375
SRR1783602	moderate drought stress	2.186
SRR1811619	moderate drought stress	2.192

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.986
DRR006520	Root Summer glycyrrhizin high producing strain	1.859
DRR006521	Root Winter glycyrrhizin high producing strain	6.093
DRR006522	Root Winter glycyrrhizin high producing strain	6.229
DRR006523	Root Summer glycyrrhizin low producing strain	3.247
DRR006524	Root Summer glycyrrhizin low producing strain	3.230
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	64.970

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.535
SRR2868004	Drought Stress (root)	50.190
SRR2967015	Control (root)	28.133

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.321
SRR9715740	Leaf	41.587
SRR9715741	Leaf	58.236
SRR9715739	Root	1.867
SRR9715742	Root	26.632
SRR9715743	Root	20.535

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.028
SRR8749028	MeJA induced 9h	76.238
SRR8749029	MeJA induced 9h	53.038
SRR8749030	Uninduced	292.345
SRR8749031	Uninduced	334.335
SRR8749032	Uninduced	198.709

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.201
SRR8400027	Control - Root	21.500