Gene detail information of Glyur000454s00019924.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63800.1 | 7.00E-75 | ubiquitin-conjugating enzyme 5 |
| NR | NP_001237603.1 | 4.15E-123 | ubiquitin carrier protein 4 [Glycine max] |
| COG | YP_008797956.1 | 5.00E-15 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| Swissprot | tr|P42749|UBC5_ARATH | 1.00E-103 | Ubiquitin-conjugating enzyme E2 5 |
| trEMBL | tr|I1MKV3|I1MKV3_SOYBN | 2.00E-123 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00454 | 134640 | 136839 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10576 | UBE2H, UBC8 | EC:2.3.2.23 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000454s00019924.1 | PF00179.21 | UQ_con | 13 | 142 | 2.60E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.450 |
| SRR1783600 | control | 33.495 |
| SRR1783602 | moderate drought stress | 40.814 |
| SRR1811619 | moderate drought stress | 40.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.307 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 35.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.875 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 69.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 69.780 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 58.464 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 58.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.921 |
| SRR2868004 | Drought Stress (root) | 92.999 |
| SRR2967015 | Control (root) | 73.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 78.637 |
| SRR9715740 | Leaf | 83.800 |
| SRR9715741 | Leaf | 92.278 |
| SRR9715739 | Root | 11.473 |
| SRR9715742 | Root | 19.801 |
| SRR9715743 | Root | 19.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.787 |
| SRR8749028 | MeJA induced 9h | 37.947 |
| SRR8749029 | MeJA induced 9h | 37.163 |
| SRR8749030 | Uninduced | 33.532 |
| SRR8749031 | Uninduced | 36.805 |
| SRR8749032 | Uninduced | 31.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 66.331 |
| SRR8400027 | Control - Root | 67.943 |