Gene detail

Gene detail information of Glyur000454s00019921.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00335.2	5.00E-45	RING-H2 finger B1A
NR	XP_004492769.1	2.11E-102	PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X3 [Cicer arietinum]
Swissprot	tr\|Q8LE94\|RING3_ARATH	1.00E-21	E3 ubiquitin-protein ligase At3g02290
trEMBL	tr\|I1N3S7\|I1N3S7_SOYBN	2.00E-93	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G46990.1}

Sequence

Transcript Sequence

>Glyur000454s00019921.1
ATGTTTCTGTGGTGGCTGAGCTATATAGTGACATGGATTGCTTTTGATTTAAAACTTGAAAAACTCCTGTTTCAGTGCCCACCAACTTTTGAAGAGCGCGANTCTCTAACCTCTAATGACGGTACGACTGCTTCGCTCACTGCTGGATTTCTGTTTGGGTTGAACCTGGAAACATCGGTACCTGATACTTTCCGGTCCCCTCCCGTGCCTCTGCCTTATGACATGGTCTTTGGAGGTTCTGCATCAGCAGATTCTGAGTCTGGCAGAGAAACAGTTAGTGTTAGTAGTTTCGAAACTTCAATTACACGTGATGATATTGAAGAATCAGATTGTAAAGCTCAAGCCAAATCTGCACCTATATCTCCAGGGAAGGCAGAACTATCAAAATCAAATGGAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGCCCAATTTGCCTCGATGAATATGATGATGAGAATCCTAAAAATCTGACAAATTGTGAACACCATTTTCACCTAGCTTGCATTCTTGATTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTTAAAAATAAAAAGCTTGCTAAATACATGGAAGGTAGATGAAGTTCATTGTGTGATAACTGGTTAGATGATGGTAGCCACAGATTCAGTTTCAATTCATGATACATTGAAGAAGTCATTATTTAAGTAGACTCAATCATTGGGCATCTCTGAGAAGAAGAATGAAGTTTTGGCAGAATGCTACACCATATAGCCTCTCTCTTTGAATGCAAGTCCTCTATATGGAATTTGCCTATTATTATAGTGGAAGAATTCAGCAGTTCTCTATATGCCAAAATTCATGTTCACAGATGGCCTTTTTCTTGATTTAATTTTATTTCATTTGCTGCTTTCCATTTTCTTGCNAAATTTTATCAATATTTATTTCTCATTCTATGTTATTTTCTTTACTTTTCTCTTCTTTTTTTTGTTTATTTGGGGGAGGGAGCATACTGTACTTGTAAATAATGTCTGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00454	116726	118559	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000454s00019921.1	PF13639.1	zf-RING_2	142	184	2.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.502
SRR1783600	control	3.425
SRR1783602	moderate drought stress	3.950
SRR1811619	moderate drought stress	4.090

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.226
DRR006520	Root Summer glycyrrhizin high producing strain	4.084
DRR006521	Root Winter glycyrrhizin high producing strain	51.862
DRR006522	Root Winter glycyrrhizin high producing strain	51.518
DRR006523	Root Summer glycyrrhizin low producing strain	7.366
DRR006524	Root Summer glycyrrhizin low producing strain	7.802
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.374
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.552

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.071
SRR2868004	Drought Stress (root)	22.932
SRR2967015	Control (root)	25.148

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.946
SRR9715740	Leaf	26.657
SRR9715741	Leaf	25.214
SRR9715739	Root	2.431
SRR9715742	Root	7.190
SRR9715743	Root	5.769

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.992
SRR8749028	MeJA induced 9h	8.393
SRR8749029	MeJA induced 9h	8.688
SRR8749030	Uninduced	12.133
SRR8749031	Uninduced	19.918
SRR8749032	Uninduced	12.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.064
SRR8400027	Control - Root	20.999