Gene detail information of Glyur000454s00019920 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46060.1 | 0 | transmembrane protein-related |
| NR | XP_003533601.1 | 0 | PREDICTED: uncharacterized protein LOC100778959 isoform X1 [Glycine max] |
| trEMBL | tr|K7LG28|K7LG28_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G39290.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00454 | 102671 | 109385 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000454s00019920.1 | PF12036.3 | DUF3522 | 562 | 770 | 3.10E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.644 |
| SRR1783600 | control | 4.638 |
| SRR1783602 | moderate drought stress | 6.018 |
| SRR1811619 | moderate drought stress | 5.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.905 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.789 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.596 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.044 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.010 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.776 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.659 |
| SRR2868004 | Drought Stress (root) | 6.830 |
| SRR2967015 | Control (root) | 6.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.546 |
| SRR9715740 | Leaf | 8.028 |
| SRR9715741 | Leaf | 7.774 |
| SRR9715739 | Root | 2.363 |
| SRR9715742 | Root | 7.118 |
| SRR9715743 | Root | 5.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.272 |
| SRR8749028 | MeJA induced 9h | 0.684 |
| SRR8749029 | MeJA induced 9h | 0.344 |
| SRR8749030 | Uninduced | 0.536 |
| SRR8749031 | Uninduced | 0.152 |
| SRR8749032 | Uninduced | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.790 |
| SRR8400027 | Control - Root | 8.951 |