Gene detail information of Glyur000454s00019914 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12010.1 | 1.00E-18 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_004492774.1 | 0 | PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum] |
| COG | YP_005320665.1 | 3.00E-11 | putative lipoprotein [Saprospira grandis str. Lewin] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 2.00E-28 | TMV resistance protein N |
| trEMBL | tr|Q2HUD1|Q2HUD1_MEDTR | 0 | TIR {ECO:0000313|EMBL:ABD28703.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00454 | 56746 | 62294 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000454s00019914.1 | PF00931.17 | NB-ARC | 63 | 136 | 5.80E-12 |
| Glyur000454s00019914.1 | PF00560.28 | LRR_1 | 155 | 176 | 1.2 |
| Glyur000454s00019914.1 | PF00560.28 | LRR_1 | 178 | 198 | 0.082 |
| Glyur000454s00019914.1 | PF00560.28 | LRR_1 | 269 | 288 | 0.025 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.898 |
| SRR1783600 | control | 1.902 |
| SRR1783602 | moderate drought stress | 5.696 |
| SRR1811619 | moderate drought stress | 5.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.521 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.553 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.225 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.142 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.372 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.041 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.346 |
| SRR2868004 | Drought Stress (root) | 15.480 |
| SRR2967015 | Control (root) | 11.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.109 |
| SRR9715740 | Leaf | 3.218 |
| SRR9715741 | Leaf | 5.842 |
| SRR9715739 | Root | 1.115 |
| SRR9715742 | Root | 4.695 |
| SRR9715743 | Root | 5.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.453 |
| SRR8749028 | MeJA induced 9h | 6.529 |
| SRR8749029 | MeJA induced 9h | 3.308 |
| SRR8749030 | Uninduced | 3.527 |
| SRR8749031 | Uninduced | 2.429 |
| SRR8749032 | Uninduced | 2.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.251 |
| SRR8400027 | Control - Root | 13.919 |