Gene detail

Gene detail information of Glyur000453s00023829

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80760.1	2.00E-79	NOD26-like intrinsic protein 6;1
NR	XP_003604218.1	5.10E-143	Nodulin-like intrinsic protein NIP1-1 [Medicago truncatula]
COG	YP_005009762.1	1.00E-36	MIP family channel protein [Niastella koreensis GR20-10]
Swissprot	tr\|Q9SAI4\|NIP61_ARATH	4.00E-120	Aquaporin NIP6-1
trEMBL	tr\|Q6QIL3\|Q6QIL3_MEDTR	2.00E-143	Uncharacterized protein {ECO:0000313\|EMBL:AFK33950.1}

Sequence

Transcript Sequence

>Glyur000453s00023829.1
NGGACCTTAGAAGATGGAGCCTTGCCCAAAGTCTCTTGCTCTTTGCCACCCCCTCCTGTTCCTCTAGCCAAAAAGGTAGGAGCTGAGTTTATAGGCACATTCATTCTCATGTTTGCTGGGACAGCCACTGCAATTGTGAACCAAAAGGTACAGAACTCAGAGACTCTGATTGGGTGTGCNACATCTTCTGGACTTGCTGTCATGATCATCATCCTCTCCACTGGCCACATCTCTGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCATGGAAGAATGGGATCTTTGATCCCTTCATGAGTGGTGGAGTCACNGTTCCTTCAGTAGGATATGGACAAGCTTTTGCTCTAGAGTTCATTATTGGCTTTAATCTCATGTTCGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAGCTTGCGGGAATCGCGGTGGGAGCCACCGTCTTGCTCAACATACTCATAGCCGGGCCTGCAACAGGAGGGTCAATGAACCCAGTAAGAACACTTGGTCCAGCAATTGCAGCAAACAACTACAAAGGCATATGGCTATATATGATAGCTCCAATAATGGGAGCTCTAGGTGGTGCAGGTGCCTACACAATGGTCAAGCTGCCGGATGAAGATATTGACGCCCANGCAAAGGCCTCTTCAGCCCCCGGTAGCTTCAGAAGGTGATCCATATATCGATCGATTCGTCCCGGCCCAGAAAATCAACCCATTTGACGGGTTACATATTAAGATATATTTTTTTGGGTGAATTTGGGTATTTTATTAAAATATATTTGTGTGTATGATAATATAAATATCATATATATGGAAAAGCAAGCAATTAAATACGAGTGCTGTTTAGTTTGGTACATGCACATATTACATGTCTGTCTTCAAATATTGCGTCAATTGCGCCTAAAATGTATAATCCAAGGAAAAATGAGTGCTGTTTAATTTGNATACATGTTCTTGTTATTCTACTTTTTTTTTCTTGTTTTTGGTTTATATTCATAGTATCTTAGGGGAAAAGGACACTGGACTAATCTGTAGTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00453	148576	153874	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000453s00023829.1	PF00230.15	MIP	22	102	4.50E-17
Glyur000453s00023829.1	PF00230.15	MIP	112	209	5.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	192.436
SRR1783600	control	192.119
SRR1783602	moderate drought stress	249.644
SRR1811619	moderate drought stress	249.734

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.786
DRR006520	Root Summer glycyrrhizin high producing strain	73.418
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	15.891
DRR006524	Root Summer glycyrrhizin low producing strain	14.154
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.262

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	270.297
SRR2868004	Drought Stress (root)	281.148
SRR2967015	Control (root)	104.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.128
SRR9715740	Leaf	19.598
SRR9715741	Leaf	26.313
SRR9715739	Root	127.382
SRR9715742	Root	272.602
SRR9715743	Root	241.890

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	357.510
SRR8400027	Control - Root	417.905