Gene detail

Gene detail information of Glyur000453s00023828

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15880.1	1.00E-102	golgi snare 11
NR	XP_007135805.1	8.26E-147	hypothetical protein PHAVU_010G160100g [Phaseolus vulgaris]
Swissprot	tr\|Q9LMP7\|GOS11_ARATH	1.00E-129	Golgi SNAP receptor complex member 1-1
trEMBL	tr\|V7AQH1\|V7AQH1_PHAVU	3.00E-147	Golgi SNAP receptor complex member 1 {ECO:0000256\|PIRNR:PIRNR027109}

Sequence

Transcript Sequence

>Glyur000453s00023828.1
CATAATTCTCAACTCAACACACGTCTTCTCTAAGAAAGGAAAGCAGTCAGTTGGATCTACACTTCTGCATTAGAAAGCAAGCAAACTCATTTTTTTCTTTTCCTTCCTTTCCTCTTTCTCTATTGTGAAAACAAAAAACAGAAAACAAAAACATCAAAAAGAGAAAAAGGAGGAGGGAATAGGCAATTGTCGATCGAGTCGTNTGTCCCCGCGGGAGCAGACGGCCTGTCTTCATCGCCAAACAAACAAACCCAAAAAGAAGAAAGAAAAAACCATCGATCTTCAACATCGGTGTTCCATTAAGAAAGTTTCGATTTTTGATCTTCGTTTTTGTGTTTTTTCAGCCATGGAGGTGCCTAGTTCCTGGGATGCCCTTCGCAAACAGGCAAGAAAACTTGAAGCTCAGCTGGACGAGCGGATGAATGCTTATCGTAAATTGGTTTCTGCTAATATTTCTACAAAAGGTGATGCTGNAGAGAGTGATCTAGAGTCTTGGATTGAGCGATTACTAAAACAACTCCAACAAGTAAACTCACAGATGCAAGCTTGGGTATCATCTGGTGGTTCAGATATGGTTTCTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTCAAGCTAAGCAAGAACATGCTTCACTATTAGAGGATTTTAAAGAATTTGATCGGACAAGATTAGACTTGGAAGAGGGTGCAGAATCTGACCAGCATGCACTCCTAAAAGAGCATGCATCTATCAGCAGAAATACTGGACATATGGACACTGTTATTTCACAAGCACAAGCAACACTCGGTGCACTTGTTTTCCAGCGTTCAACATTTGGTGGCATCAATTCAAAGNTCAGCAATGTGAGCAGTCGCCTCCCAACGGTAAATAACATACTCTCAGCAATAAAGAGAAAAAAGTCAATGGATACCATTATACTTTCCCTTGTTGCATCCGTATGCACATTTCTCATTTTCATCTACTGGCTAAACAAATGAGGCTGTTTGTTTATTTTGGTGGGGTTCTCAACTTGTGTAAACAACCTTTTGTATGTGTTCCTTGTCTATTGGGGTTTCAGGGTAGTGTATTGTATTGTTCATTTGATTGATTTTCCTTGTATCAGAAGAAGCAATGCTGAGTAAAGAATCCAGAAATTATCCCAAAAAAATGATAAAAAGATATCAGTGTTCCATTTCTTTGTTATGATATCTTGATCATAGCTTGTAGAAAGTGGAAAAAAAATATCAAATAAATTTCAGTAAGTGGTATAGATTGGAATGAAAAAGCCTTGTCAATAATATTGTTGTGGCATAATTGGTTCTCTTCTTATTCCTTTGCCCTCACCAAATGCCTACACCAATCAAACATGTTACATTAGGNTTCCAGGGTTCTATGTGAACTCGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00453	141000	145410	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006888 ER to Golgi vesicle-mediated transport

cellular_component

GO:0000139 Golgi membrane

GO:0005801 cis-Golgi network

GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000453s00023828.1	PF12352.3	V-SNARE_C	135	199	9.20E-18
Glyur000453s00023828.2	PF12352.3	V-SNARE_C	129	193	8.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.467
SRR1783600	control	16.238
SRR1783602	moderate drought stress	15.996
SRR1811619	moderate drought stress	15.996

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.644
DRR006520	Root Summer glycyrrhizin high producing strain	26.561
DRR006521	Root Winter glycyrrhizin high producing strain	212.640
DRR006522	Root Winter glycyrrhizin high producing strain	205.918
DRR006523	Root Summer glycyrrhizin low producing strain	25.064
DRR006524	Root Summer glycyrrhizin low producing strain	25.331
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.842
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.776

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.468
SRR2868004	Drought Stress (root)	45.114
SRR2967015	Control (root)	46.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.240
SRR9715740	Leaf	11.996
SRR9715741	Leaf	18.298
SRR9715739	Root	1.938
SRR9715742	Root	11.560
SRR9715743	Root	9.851

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.720
SRR8749028	MeJA induced 9h	70.575
SRR8749029	MeJA induced 9h	93.165
SRR8749030	Uninduced	111.624
SRR8749031	Uninduced	207.253
SRR8749032	Uninduced	144.830

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.307
SRR8400027	Control - Root	33.714