Gene detail

Gene detail information of Glyur000453s00023824

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15870.1	6.00E-64	Mitochondrial glycoprotein family protein
NR	XP_004515528.1	9.73E-125	PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q8W487\|YB95_ARATH	2.00E-24	Uncharacterized protein At2g39795, mitochondrial (Precursor)
trEMBL	tr\|G7JD84\|G7JD84_MEDTR	7.00E-114	Glycoprotein family protein {ECO:0000313\|EMBL:AES86398.1}

Sequence

Transcript Sequence

>Glyur000453s00023824.1
CGGAGTTCCAATTTCCACATTGTTGTTTCGCTGCTTCTTAATTTGTGATTTCATTTGACCAAAAAAAAAATTTGTGATTTCATAAACCCTTTTCCCTCTAAACTCTCTGCACTTTGTGGAGTTGTCCAATAATGGCACGCNTGCTCCGTTCCCTCAGAAAAACCCTAACCCTAACCCACCAACTTCACCACCATCAACAACAACGATTATGCATTGGTCCTCCTCTGCTTTCCCGAAGAACTTACATCTCTGAAATGCGCAAAGAAGCTTTCGAAGGAATCATTTTGAGATACCTTCGCAACGAGATTCAGTACGAGCTCCAATCCTCTCCTTCTCCCAATCCCCTTGTTAACAAATTTGGTTCCTTCTTGGTGGATGGACGGCCCGGGGAGCGATGGATTACATTGAGAAGGCAATTTGCTGATGAAGATATTAAAGTTGAAGTGACCATGTTTGATGGAGCTGTTCCTGCTCCAAGTGCAAGTGGTGGTGTAGCTGATGCAAATGAAATGCAGCTACACAGCACCTTAGTTGTCAGCATCTCCAAGGGAGAAGGTGGTGTGCTGGAAATCATGTGCTCTGCTTGGCCAGACACTATAGAGATAAAGAGGCTGTTCATACGTTCGGACAAAAAGATGCCAGCTGAGCCCTATGCTGGTCCTGATTTTGAGGAATTGGATGATGAGTTGCAGGATAGCCTTTATGATTTCTTGGAAGCAAGGGGTATAACTGATGAACTTGCCATTTTCTTGCATCAGTACATGAAACACAAGGGTAAGACAGAGTTAGTAAGATGGATGGAGAGTGTTAAATCTTTTATTGAAAGGAAATAAAGGGATTGGAATTTCAATGTTCCAGATAAGATAAGCNATGAGGTCATATCTCTTATGTATTTTGCCACTGAAGTCTAAATCTAAGCAGGTAAACATTTTTGTTTTTTGTTCGCCACTGCTTTAGATTTATAGTTGTTGGTGGAAGTGGTATTACCTGTGGACTTTACATACAAGCTCACTTTAGATGATTTTTCCAAACTAACGTATATTCTTGAAGGGTCATTTTCCATCCATGTACTGCATGGAACAATCTCTCTTGCACATAATTCTTGTCATAGAATCATGTGTCTTTAGCACAATGGATTTCTTTTTGCTGGGTCACTTTTGAGACAGACATGTATTAATGTTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00453	119987	122212	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005759 mitochondrial matrix

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000453s00023824.1	PF02330.11	MAM33	56	230	1.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.822
SRR1783600	control	9.985
SRR1783602	moderate drought stress	8.863
SRR1811619	moderate drought stress	8.884

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.178
DRR006520	Root Summer glycyrrhizin high producing strain	13.026
DRR006521	Root Winter glycyrrhizin high producing strain	5.669
DRR006522	Root Winter glycyrrhizin high producing strain	5.587
DRR006523	Root Summer glycyrrhizin low producing strain	10.974
DRR006524	Root Summer glycyrrhizin low producing strain	11.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.823
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.484

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.432
SRR2868004	Drought Stress (root)	9.853
SRR2967015	Control (root)	7.816

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.668
SRR9715740	Leaf	4.427
SRR9715741	Leaf	5.170
SRR9715739	Root	6.051
SRR9715742	Root	5.685
SRR9715743	Root	7.355

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.184
SRR8749028	MeJA induced 9h	18.020
SRR8749029	MeJA induced 9h	23.307
SRR8749030	Uninduced	5.881
SRR8749031	Uninduced	6.525
SRR8749032	Uninduced	6.437

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.423
SRR8400027	Control - Root	7.095