Gene detail

Gene detail information of Glyur000453s00023818

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33590.1	9.00E-100	NAD(P)-binding Rossmann-fold superfamily protein
NR	AFK46072.1	9.08E-180	unknown [Medicago truncatula]
COG	YP_002017749.1	3.00E-37	NAD-dependent epimerase/dehydratase [Pelodictyon phaeoclathratiforme BU-1]
Swissprot	tr\|Q9SAH9\|CCR2_ARATH	3.00E-67	Cinnamoyl-CoA reductase 2
trEMBL	tr\|I3T0N0\|I3T0N0_MEDTR	3.00E-180	Uncharacterized protein {ECO:0000313\|EMBL:AFK46072.1}

Sequence

Transcript Sequence

>Glyur000453s00023818.1
ATGGAAGAAGAAGAAGAAGGTGTTGCCGTATGTGCAGAAGGATCTGCTAACAACTTACAGATTGATGCCACCCAGGGCATAGACGAAATATTGTTGCTAGAGGATGATAATGAAAGTAACAGAACAGAAGAAGGGCCAGCAGGCACTGAAGAAAGGAAAGGAAGACAAATTAGGAGGAAAAAAGGTATTTTGGTAATTGGTAAGGAGATGGCAACGAGAGGTAGTAAGAAGGTGTGCGTGACTGGTGCTGGAGGCTTTGTAGCCTCTTGGCTTGTTAAGCTTCTCCTTTCCAAAGGATACATTGTCCATGGAACAGTCAGAGAACCTGCAGGTAGTCAGAAATATGAACACTTGCTGAAATTGGAAAGAGCTTCTGAGAACCTTACACTCTTCAAGGCTGATCTCTTGAATTACCAATCTGTTTTCTCCGCAATTGTTGGATGCAGTTCAGTTTTCCATGTTGCTAGCCCTGTCCCCTCAACTGTTTCATCCAATCCCGAGGCAACCATCCATCTAATTCTACAACTTGCAACTTTTTTTTTTTTTATTGGTTTGGTAGAAGTGATTGAGCCTGCAGTGAAGGGAACTGCTAATGTACTTGAAGCTTCTCTTAAAGCTAAAGTGGAACGGGTTGTCTTTGTATCATCTGAAGCTGCTATTTGCATGACCCCTAATTTGCCAAAGGATAAAGTGATCGATGAGTCCTATTGGTCTGACAAAGAGTATTGCAGAAAAACTAAGAACTGGTATTGTTTGTCCAAGACAGAAGCAGAGGAGCAGGCCCTGGACTTTGCAAAAAGAACTGGGCTTAGTGTGGTAAGCATTTGTCCTACCGTTGTGTGGGGACCAATTTTACAGTCAACCACTAATGCAAGTAGCTTGATTCTCCNCAAACTTTTAAAAGTGGGCTTCGATTTTCGGTGTACGAGTTTGGCCTTGGCAATTTACTTGCTTGTCTTTCTTGTTTGTCTGAAATCTGAAGGTTGTGACTCATTGGAGAATAAGCTTCGTTTGGTAGTAGATGTACGAGATCTAGTTGATGCAATACTTTTGGCTTATGAGAAGCATGAGGCAGAAGGGAGATACATATGCACTTCACATGCTATCAACACAAGNGATTTGGTGGAGAAATTAAAGAGTATATATCCACACGACAAGTACCCGACTAACTATATTGAGGTGGATGATTACAAAAGGTTGAGCTCAGAGAAACTGCAAAGGTTGGGTTGGAAATACAGGCCACTGGAGGAAACACTCATTGATTCTGTTGAGAGCTATAGGAAGGCTGGACTTTTGCAATCAGAATAAATTTGGTTTGTTACATATCATCTCCCTATTGGGAGGCTGGTTTCCTTGAATAAAAATAAATGTGACTTGTTATTTAGCATCTCCCTATTGGAAGGGATTTGTGAATGTCTTTCAGTTGTTACATGTGCTTGATCTATTATCAGATAATAAACAATACGGACTAAATTATTCCTCATTTCAGATTATGAATATTAACATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00453	69862	73880	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000453s00023818.1	PF01370.16	Epimerase	78	361	4.30E-20
Glyur000453s00023818.2	PF01370.16	Epimerase	78	335	8.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.660
SRR1783600	control	2.600
SRR1783602	moderate drought stress	2.205
SRR1811619	moderate drought stress	2.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.998
DRR006520	Root Summer glycyrrhizin high producing strain	2.201
DRR006521	Root Winter glycyrrhizin high producing strain	2.319
DRR006522	Root Winter glycyrrhizin high producing strain	2.419
DRR006523	Root Summer glycyrrhizin low producing strain	0.504
DRR006524	Root Summer glycyrrhizin low producing strain	0.549
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.174
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.746
SRR2868004	Drought Stress (root)	12.956
SRR2967015	Control (root)	12.670

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.652
SRR9715740	Leaf	19.263
SRR9715741	Leaf	31.559
SRR9715739	Root	0.097
SRR9715742	Root	1.401
SRR9715743	Root	1.067

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.042
SRR8749028	MeJA induced 9h	6.174
SRR8749029	MeJA induced 9h	4.413
SRR8749030	Uninduced	4.028
SRR8749031	Uninduced	2.179
SRR8749032	Uninduced	1.935

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.111
SRR8400027	Control - Root	8.255