Gene detail

Gene detail information of Glyur000453s00023814

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33590.1	9.00E-99	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004515542.1	0	PREDICTED: cinnamoyl-CoA reductase 2-like isoform X1 [Cicer arietinum]
COG	YP_002017749.1	1.00E-44	NAD-dependent epimerase/dehydratase [Pelodictyon phaeoclathratiforme BU-1]
Swissprot	tr\|Q9SAH9\|CCR2_ARATH	6.00E-78	Cinnamoyl-CoA reductase 2
trEMBL	tr\|I3T0N0\|I3T0N0_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46072.1}

Sequence

Transcript Sequence

>Glyur000453s00023814.1
ATGGCAACGAGTGGTAATAATAAGAAAGTGTGCGTAACTGGGGCAGGAGGGTTTGTTGCCTCTTGGCTTGTTAAGCTTCTCCTTTCCAAAGGATACACTGTCCATGGAACTGTTAGACAACCTGGTAGTCAGAAATATGAACACTTGCTGAAATTGGAAAGAGCTTCTGAGAACCTTACACTCTTCAAGGCTGATCTCTTGAATTACCAATCTGTTTACTCTGCAATTGTTGGATGCACTGCAGTTTTCCATGTTGCTAGCCCTGTAGAAGTGATTGAGCCTGCAGTGAAGGGAACTGCTAATGTACTTGAAGCTTCTCTTAAAGCTAAAGTGGAACGGGTTGTCTTTGTATCATCTGAAGCTGCTATTTGCATGACCCCTAATTTGCCAAAGGATAAAGTGATCGATGAGTCCTATTGGTCTGACAAAGAGTATTGCAGAAAAACTAAGAACTGGTATTGTTTGTCCAAGACAGAAGCAGAGGAGCAGGCCCTGGACTTTGCAAAAAGAACTGGGCTTAGTGTGGTAAGCATTTGTCCTACCGTTGTGTGGGGACCAATTTTACAGTCAACCACTAATGCAAGTAGCTTGATTCTCCGCAAACTTTTAAAAGGTTGTGACTCATTGGAGAATAAGCTTCGTTTGGTAGTAGATGTACGAGATCTAGTTGATGCAATACTTTTGGCTTATGAGAAGCATGAGGCAGAAGGGAGGTACATATGCACTTCACATGCTATCAACACACGGGATTTGGTGGAGAAACTAAAGAGTATATATCCACATGACAAGTACCCGACGAACTATATTGAGGTGGATGATTACAGAATGTTGAGCTCAGAGAAACTGCAAAGTTTGGGTTGGAAATACAGGCCACTGGAGGAAACACTCATTGATTCTGTTGAGAGCTATAAAAAGGCTGGACTCCTGCAATCAGAATAGATTTGGTCTGTTACATATCATCTCCCTATTGGGAGGCTGGTTTACTCAAATCAAAATAAATGTGACTTGTTATTTAGGATCTTCCTATTGGAAGGGATTTGTGAATGTCTTTAAGTTTCTTCATGTTCTTGTTCTCCTCGAACCGATAAACACTTTTAAATTTGGGAATTCCACACTCTCTGTGTTCTTAAATATTGCGCATTTCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00453	45778	50232	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000453s00023814.1	PF01370.16	Epimerase	10	238	1.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.150
SRR1783600	control	2.228
SRR1783602	moderate drought stress	1.963
SRR1811619	moderate drought stress	1.991

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.898
DRR006520	Root Summer glycyrrhizin high producing strain	2.650
DRR006521	Root Winter glycyrrhizin high producing strain	0.624
DRR006522	Root Winter glycyrrhizin high producing strain	0.698
DRR006523	Root Summer glycyrrhizin low producing strain	1.749
DRR006524	Root Summer glycyrrhizin low producing strain	1.892
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.081
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.895

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.356
SRR2868004	Drought Stress (root)	45.484
SRR2967015	Control (root)	38.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.452
SRR9715740	Leaf	2.102
SRR9715741	Leaf	4.133
SRR9715739	Root	1.004
SRR9715742	Root	3.401
SRR9715743	Root	4.246

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.303
SRR8749028	MeJA induced 9h	1.524
SRR8749029	MeJA induced 9h	1.913
SRR8749030	Uninduced	1.954
SRR8749031	Uninduced	1.173
SRR8749032	Uninduced	3.207

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.218
SRR8400027	Control - Root	8.186