Gene detail

Gene detail information of Glyur000452s00029835

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27940.1	3.00E-143	manganese tracking factor for mitochondrial SOD2
NR	XP_004502609.1	0	PREDICTED: mitochondrial carrier protein MTM1-like [Cicer arietinum]
Swissprot	tr\|Q944H5\|MTM1_ARATH	3.00E-177	Mitochondrial carrier protein MTM1
trEMBL	tr\|G7J698\|G7J698_MEDTR	0	Solute carrier family protein {ECO:0000313\|EMBL:AES72442.1}

Sequence

Transcript Sequence

>Glyur000452s00029835.1
ACCAATTTTATTTCATTTTTATTATTTTTATATTTTTTCCCGTTCACTTGCTTCTCATGCATACACACACACACACACAAGGAAAATTCCTTCTCAATTAATCAATTAATAAAGAAGCACAAAACCAATTGAGTCGTCGTTTTTACATTTGCGTCTAATAAACAGAGAATGGCGGATTCAGAGGAGCGAACCCAAAACCCATGGATGGCTTCAGATCAAACGACACAACGTTTTTACTCCTCCTACGCCGCCGTCGCAATCATCAAGCAGTGATAAATTGGGAATCGGAGAACGCGCTTTCTCCGCCGCCGGCGCCGCTTCCTCTCCGCCGTCATTGTCAATCCCTCGATGTTGCCAAGACAAGGTTGCAAGCACAAGCTGCAGGGGTTGCTTATTNTCATCCACTCAGTAATATGACCAGTCGTATGGCTTGTTTTGGGCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCGTCGTGTAATCGGGCTGGAATGCATGGCACAGTATCACTTTGTCCTCCTGAATGCTTTCGGTACAAAGGAACACTGGATGTCATGTACAAAATTATACAACAGGAAGGATTTTCTAGGCTATGGAGAGGCACAAATGCAGGCCTGGCACTTGCAGTACCAACTGTTGGAATTTACCTTCCTTGCTATGACATATTCCGCAACTGGTTTGAGGAATTCACAACCAAAAGTGCTCCAGCTGCAACTCCATATGTACCTTTAGTGGCTGGTTCATTGGCACGCTCACTGGCTTGTGCAACTTGCTATCCTATTGAACTTGCCAGAACTCGCATGCAGGCATTTAAAGAGACTCAAATTTGTAAAAAGCCTCCTGGAGTCTTCCAGACTTTGCTAGGTGTTGTCTCGCATGTCAAGAGCACAAATAGTCCACAGAACAGCTTGCAAGGTTACCGTGTCCTGTGGACTGGTATGGGTGCTCAACTTGCTCGTGACGTACCATTCTCTGCGATTTGTTGGTCGACACTTGAGCCTACTAGAAGAAAACTTATTAGTTTGGTTGGAGGCGATGATGCCGGTCTATTGAGTGTTCTTGGCGCAAATTTTTCAGCTGGTTTTGTTGCAGGAACTCTAGCAGCTGGAGCTACATGTCCGCTAGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTCAGGGNGTTGAAGATGACTACAAAACAGACACTCATTGAAGTTTGGAGAGATGGAGGCTTGAAAGGACTCTTTACGGGTTTTGGTCCACGAGTCGGTCGAGCAGGCCCCTCCGTTGGAATTGTGGTTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCACCGGTACACAACATCATGATCAGGTCCTTAATTGTGGATACTTTTTTTTAATTGCCGAAGCGGCTTTTATTGAGAATCTATGGAGATTTCGCAGAAAGTTTTTTTGGAAGGGAAGTCATTCCAGTCCGTTTTTGATCACGAACTAACACTCTTGAATAGAAAAATGACCAATATAGGACATGCTCCTAGTCTAGGTTTTTNAGTCTCCTTTTTGTGATTTTGCTGCCTTTGACAAGCAGAATTCAATTTTGTTACACTTGTGATTCTCCCCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00452	140800	145157	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000452s00029835.1	PF00153.22	Mito_carr	47	162	2.30E-10
Glyur000452s00029835.1	PF00153.22	Mito_carr	174	273	8.20E-12
Glyur000452s00029835.1	PF00153.22	Mito_carr	290	376	3.80E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.758
SRR1783600	control	4.694
SRR1783602	moderate drought stress	4.480
SRR1811619	moderate drought stress	4.642

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.493
DRR006520	Root Summer glycyrrhizin high producing strain	7.092
DRR006521	Root Winter glycyrrhizin high producing strain	5.111
DRR006522	Root Winter glycyrrhizin high producing strain	5.117
DRR006523	Root Summer glycyrrhizin low producing strain	7.719
DRR006524	Root Summer glycyrrhizin low producing strain	7.834
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.385

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.375
SRR2868004	Drought Stress (root)	16.178
SRR2967015	Control (root)	13.528

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.265
SRR9715740	Leaf	33.454
SRR9715741	Leaf	24.990
SRR9715739	Root	6.024
SRR9715742	Root	7.570
SRR9715743	Root	7.221

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.406
SRR8749028	MeJA induced 9h	17.998
SRR8749029	MeJA induced 9h	21.885
SRR8749030	Uninduced	6.675
SRR8749031	Uninduced	7.594
SRR8749032	Uninduced	7.083

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.272
SRR8400027	Control - Root	13.632