Gene detail

Gene detail information of Glyur000452s00029833

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27950.1	4.00E-44	cytokinin response factor 4
NR	XP_003602186.1	2.07E-146	Ethylene responsive transcription factor 1a [Medicago truncatula]
Swissprot	tr\|Q9SUE3\|CRF4_ARATH	1.00E-53	Ethylene-responsive transcription factor CRF4
trEMBL	tr\|G7J693\|G7J693_MEDTR	8.00E-147	Ethylene response factor {ECO:0000313\|EMBL:AES72437.1}

Sequence

Transcript Sequence

>Glyur000452s00029833.1
ATGGAACAACAACAGAGTATCCTATGTTGCAAATACACAGAATACCACAGCGTTACCAAGAAGTTCTTCTCACACAAGAAGAACGGTAACAACAGTAACACAATAGAGCCAACTCCAAGAGTGGTTCGAATATCCTTCACCGACCCAGACGCAACCGACTCATCAAGCGACGAAGAAGGGGGTTTTCATTTCCCAAACAGAACCAAACGCTATGTTAACCGAATCGAGATCGAAACCACAAAAAACGCCGTCGTTTCAAGGAAGAGACCCGCCGGAGAGACCTCATCTTCTCGGCGGCCGGCGAAGCTTCCGGTTGTTTCCGGCACCGGAAGAAAGTTCCGCGGCGTCCGGCAGAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGCACGGAGGGTTCGACTCTGGTTGGGAACTTTCGACACCGCCGAGGAAGCCGCCATGGTTTACGACAATGCCGCGATTAAGCTTCGCGGCCCCGACGCCTTGACGAACTTCGTCACGCCGCCGCAGAAGGAAAATCTGTCTCCGCCGGAAAAATCTTCCGCCGCCGCCGAAATGAAGGTAGTTGTCGACGCCGAAGTCGAAGTCTCTGGTTCCGGTTATGACTCCGGCGACGACCGGTGTCTCGCACTTTCTTCTCCAACTTCGGTTCTCCAATTCCGGAGCAGCAACTCGGAAAAACCGGTCGAACCGGAGGGTTCGGAAGTGTCCGGTTCGGGGGAGACGAGTTTTTCATTGTTCGAGGATACGGATCGGTTTCTTCAGATGGATAGTACTATCCCAGTTTGGGACGAAATGTTCAATTTTCAAACTCCAGAGTTCCCTTTCCTCTTTGAAGGTGAAGAATCGCAACAAATGATGTTGGGTGAAACGACGCCGTTTTCATCCTCGGAGGAAGATTTCGTCGACAGCATTGTCCTCGCTGATTCTCTCATAGACTTTGACAAAGCATGCTCTAATCCTTCTCCTCCTTCCTCAAATGTTTGCCATGTGGACGATTACTTTCAAGACATTTTGTTGGGTTCTGATCCTCTGGTTTTGCTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00452	99292	100347	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000452s00029833.1	PF00847.15	AP2	112	161	5.10E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.822
SRR1783600	control	1.831
SRR1783602	moderate drought stress	0.459
SRR1811619	moderate drought stress	0.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.715
DRR006520	Root Summer glycyrrhizin high producing strain	0.791
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.119
DRR006524	Root Summer glycyrrhizin low producing strain	1.119
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.088

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.165
SRR2868004	Drought Stress (root)	1.429
SRR2967015	Control (root)	1.981

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.159
SRR9715740	Leaf	0.526
SRR9715741	Leaf	0.086
SRR9715739	Root	1.158
SRR9715742	Root	1.919
SRR9715743	Root	2.425

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.425
SRR8749028	MeJA induced 9h	6.667
SRR8749029	MeJA induced 9h	7.556
SRR8749030	Uninduced	6.252
SRR8749031	Uninduced	0.601
SRR8749032	Uninduced	2.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.164
SRR8400027	Control - Root	1.109