Gene detail information of Glyur000452s00029826 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21326.1 | 1.00E-15 | VQ motif-containing protein |
| NR | KHN44242.1 | 2.50E-84 | Protein MKS1 [Glycine soja] |
| Swissprot | tr|Q8LGD5|MKS1_ARATH | 1.00E-17 | Protein MKS1 |
| trEMBL | tr|I1JYW2|I1JYW2_SOYBN | 2.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00452 | 25656 | 26444 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000452s00029826.1 | PF05678.9 | VQ | 64 | 93 | 3.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.179 |
| SRR1783600 | control | 7.048 |
| SRR1783602 | moderate drought stress | 8.851 |
| SRR1811619 | moderate drought stress | 8.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.017 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.037 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.872 |
| SRR2868004 | Drought Stress (root) | 51.360 |
| SRR2967015 | Control (root) | 39.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.061 |
| SRR9715740 | Leaf | 14.810 |
| SRR9715741 | Leaf | 35.360 |
| SRR9715739 | Root | 138.634 |
| SRR9715742 | Root | 37.441 |
| SRR9715743 | Root | 56.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 173.048 |
| SRR8749028 | MeJA induced 9h | 250.597 |
| SRR8749029 | MeJA induced 9h | 251.333 |
| SRR8749030 | Uninduced | 661.347 |
| SRR8749031 | Uninduced | 392.724 |
| SRR8749032 | Uninduced | 349.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.353 |
| SRR8400027 | Control - Root | 16.386 |