Gene detail information of Glyur000452s00029825.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52440.1 | 2.00E-32 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_004502598.1 | 1.76E-95 | PREDICTED: dof zinc finger protein DOF5.1-like [Cicer arietinum] |
| Swissprot | tr|Q9SVC5|DOF35_ARATH | 1.00E-43 | Dof zinc finger protein DOF3.5 |
| trEMBL | tr|G7J664|G7J664_MEDTR | 4.00E-91 | Dof domain zinc finger protein {ECO:0000313|EMBL:AES72408.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00452 | 12400 | 13287 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000452s00029825.1 | PF02701.10 | zf-Dof | 36 | 91 | 1.70E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.112 |
| SRR1783600 | control | 0.118 |
| SRR1783602 | moderate drought stress | 0.086 |
| SRR1811619 | moderate drought stress | 0.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.733 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.727 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.511 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.427 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.684 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.587 |
| SRR2868004 | Drought Stress (root) | 1.077 |
| SRR2967015 | Control (root) | 1.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.305 |
| SRR9715740 | Leaf | 0.424 |
| SRR9715741 | Leaf | 2.230 |
| SRR9715739 | Root | 0.573 |
| SRR9715742 | Root | 1.254 |
| SRR9715743 | Root | 2.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.340 |
| SRR8749028 | MeJA induced 9h | 24.356 |
| SRR8749029 | MeJA induced 9h | 5.207 |
| SRR8749030 | Uninduced | 10.049 |
| SRR8749031 | Uninduced | 1.137 |
| SRR8749032 | Uninduced | 2.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.292 |
| SRR8400027 | Control - Root | 0.409 |