Gene detail information of Glyur000451s00016531 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25770.2 | 3.00E-34 | Polyketide cyclase/dehydrase and lipid transport superfamily protein |
| NR | XP_003516820.1 | 3.69E-101 | PREDICTED: lachrymatory-factor synthase-like [Glycine max] |
| COG | YP_003339645.1 | 2.00E-06 | hypothetical protein [Streptosporangium roseum DSM 43021] |
| Swissprot | tr|P59082|LFS_ALLCE | 1.00E-21 | Lachrymatory-factor synthase (Precursor) |
| trEMBL | tr|I1J4K5|I1J4K5_SOYBN | 1.00E-101 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G01260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00451 | 128772 | 129305 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000451s00016531.1 | PF10604.4 | Polyketide_cyc2 | 27 | 164 | 2.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.285 |
| SRR1783600 | control | 6.348 |
| SRR1783602 | moderate drought stress | 4.324 |
| SRR1811619 | moderate drought stress | 4.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.269 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.627 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.492 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.208 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.646 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.889 |
| SRR2868004 | Drought Stress (root) | 49.161 |
| SRR2967015 | Control (root) | 18.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 155.413 |
| SRR9715740 | Leaf | 342.252 |
| SRR9715741 | Leaf | 186.079 |
| SRR9715739 | Root | 27.348 |
| SRR9715742 | Root | 29.990 |
| SRR9715743 | Root | 34.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.070 |
| SRR8749029 | MeJA induced 9h | 0.290 |
| SRR8749030 | Uninduced | 0.374 |
| SRR8749031 | Uninduced | 2.238 |
| SRR8749032 | Uninduced | 2.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.220 |
| SRR8400027 | Control - Root | 4.554 |